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Table 2 QTL regions for meat tenderness detected using haplotype-based analysis on variable-sized sliding windows

From: Sliding window haplotype approaches overcome single SNP analysis limitations in identifying genes for meat tenderness in Nelore cattle

BTA Region Position (bp) Dist LD Additive genetic variance (kg2)
SNP SW3 SW5 SW7 SW9 SW11
1 rs43761056 – rs137207255 6,317,864 – 6,324,488 6625 M 0.032 0.036
1 rs42493480 – rs42493494 125,981,534 – 126,011,455 29,922 M 0.031 0.034 0.038
3 rs109872503 – rs110244139 7,371,235 – 7,460,489 89,255 M 0.072 0.098 0.071 0.085 0.086 0.089
3 rs132795858 – rs134534136 29,474,206 – 29,610,884 136,679 S 0.038 0.049 0.051 0.051 0.050
3 rs132763845 – rs109427593 90,594,180 – 90,664,268 70,089 M 0.036 0.045
3 rs134111725 – rs133976586 93,949,186 – 94,067,553 118,368 S 0.040
4 rs43490295 1,008,553 N 0.028
4 rs137252969 – rs43385178 24,143,662 – 24,225,606 81,945 W 0.037
4 rs110513194 – rs135604613 27,834,564 – 27,894,006 59,443 S 0.042
5 rs136407209 – rs110430223 7,525,121 – 7,583,435 58,315 S 0.030
5 rs41587994 – rs109349300 18,434,417 – 18,465,179 30,763 S 0.036 0.034
8 rs133253155 – rs135484797 92,216,117 – 92,289,515 73,399 S 0.033 0.034 0.033
9 rs137367597 1,116,610 N 0.028
9 rs110938040 – rs135589084 12,339,368 – 12,406,450 67,083 M 0.048 0.053
9 rs136867942 – rs135252570 21,441,424 – 21,497,606 56,183 M 0.037
9 rs133390891 – rs43600182 61,168,282 – 61,197,874 29,593 S 0.037
9 rs110730224 – rs109847831 66,977,872 – 67,045,614 67,743 M 0.040 0.039 0.040 0.040
9 rs135160781 – rs110936646 100,716,451 – 100,721,452 5002 S 0.034
10 rs137812088 – rs133615734 20,448,593 – 20,541,764 93,172 M 0.063 0.040 0.041 0.038 0.044 0.052
10 rs134006987 – rs136312573 43,692,759 – 43,726,489 33,731 S 0.033 0.031
11 rs109122230 – rs41655045 5,751,331 – 5,768,629 17,318 M 0.033
11 rs43755797 – rs137032372 43,129,117 – 43,135,745 6629 M 0.032
11 rs136174419 – rs42731923 50,332,078 – 50,417,494 85,417 S 0.032 0.069
15 rs132639440 – rs136091960 72,439,829 – 72,470,564 30,736 M 0.036 0.040 0.051
17 rs110304377 – rs42926409 70,788,438 – 70,935,589 147,152 M 0.035 0.043 0.054 0.056
18 rs137081181 – rs134146295 14,849,540 – 14,991,573 142,034 S 0.039 0.041 0.043 0.043 0.045
24 rs135709192 – rs136715705 47,570,379 – 47,596,815 26,437 S 0.033 0.033 0.034 0.034 0.034
24 rs110779214 – rs109148899 48,585,933 – 48,632,298 46,366 S 0.038 0.038
24 rs136382747– rs135235176 55,868,854 – 55,975,740 106,887 M 0.040
25 rs110607501 – rs108984883 17,590,025 – 17,598,054 8030 S 0.033 0.034 0.034
26 rs133176306 – rs109605337 19,035,737 – 19,066,768 31,032 S 0.034 0.038
28 rs134774253 – rs42146826 26,876,269 – 26,885,074 8806 S 0.033
29 rs136755211 – rs42192064 43,980,089 – 44,042,363 62,275 S 0.032 0.032
  1. BTA Bos taurus autosome, Dist distance, LD linkage disequilibrium, SNP single nucleotide polymorphism, SW Sliding window haplotype, SW3 SW of three SNPs, SW5 SW of five SNPs, SW7 SW of seven SNPs, SW9 Haplotype SW of nine SNPs, SW11 SW of eleven SNPs, S strong LD (r2 > 0.6), M moderate LD (0.2 < r2 < 0.6), W weak LD (0.1 < r2 < 0.2), N not LD (r2 < 0.1)