Table 3 Genes located in QTL regions for meat tenderness in Nelore cattle
BTA | Position (bp) | Genes | Gene Name | Gene type |
|---|---|---|---|---|
1 | 6,317,864 – 6,324,488 | – | – | – |
1 | 125,981,534 – 126,011,455 | – | – | – |
3 | 7,371,235 – 7,460,489 | ENSBTAG00000010158 | NOS1AP | Protein coding |
3 | 29,474,206 – 29,610,884 | ENSBTAG00000024319 | LOC107132293 | Pseudogene |
ENSBTAG00000011322 | HIPK1 | Protein coding | ||
ENSBTAG00000011327 | OLFML3 | Protein coding | ||
3 | 90,594,180 – 90,664,268 | – | – | – |
3 | 93,949,186 – 94,067,553 | ENSBTAG00000002910 | ECHDC2 | Protein coding |
ENSBTAG00000003746 | SCP2 | Protein coding | ||
ENSBTAG00000026032 | FERD3L | Protein coding | ||
4 | 1,008,553 | – | – | – |
4 | 24,143,662 – 24,225,606 | ENSBTAG00000010168 | – | – |
4 | 27,834,564 – 27,894,006 | ENSBTAG00000039955 | ZYG11A | Protein coding |
ENSBTAG00000046922 | TWIST1 | Protein coding | ||
5 | 7,525,121 – 7,583,435 | ENSBTAG00000009852 | NAV3 | Protein coding |
5 | 18,434,417 – 18,465,179 | – | – | – |
8 | 92,216,117 – 92,289,515 | – | – | – |
9 | 1,116,610 | – | – | – |
9 | 12,339,368 – 12,406,450 | - | - | - |
9 | 21,441,424 – 21,497,606 | – | – | – |
9 | 61,168,282 – 61,197,874 | ENSBTAG00000020713 | BACH2 | Protein coding |
9 | 66,977,872 – 67,045,614 | ENSBTAG00000020829 | PTPRK | Protein coding |
9 | 100,716,451 – 100,721,452 | – | – | – |
10 | 20,448,593 – 20,541,764 | ENSBTAG00000007800 | TBC1D21 | Protein coding |
10 | 43,692,759 – 43,726,489 | ENSBTAG00000020281 | NIN | Protein coding |
11 | 5,751,331 – 5,768,629 | ENSBTAG00000042179 | U6 | SnRNA |
ENSBTAG00000046971 | LOC107131213 | Protein coding | ||
11 | 43,129,117 – 43,135,745 | ENSBTAG00000016534 | BCL11A | Protein coding |
11 | 50,332,078 – 50,417,494 | ENSBTAG00000006075 | SUCLG1 | Protein coding |
ENSBTAG00000042444 | U6 | SnRNA | ||
15 | 72,439,829 – 72,470,564 | ENSBTAG00000037580 | MSANTD3 | Protein coding |
17 | 70,788,438 – 70,935,589 | ENSBTAG00000013150 | THOC5 | Protein coding |
ENSBTAG00000013153 | NF2 | Protein coding | ||
ENSBTAG00000013152 | NIPSNAP1 | Protein coding | ||
ENSBTAG00000013147 | NEFH | Protein coding | ||
18 | 14,849,540 – 14,991,573 | ENSBTAG00000007096 | GAS8 | Protein coding |
ENSBTAG00000025283 | LOC101904595 | Pseudogene | ||
| Â | Â | ENSBTAG00000029640 | U1 | SnRNA |
ENSBTAG00000033441 | SHCBP1 | Protein coding | ||
24 | 47,570,379 – 47,596,815 | – | – | – |
24 | 48,585,933 – 48,632,298 | – | – | – |
24 | 55,868,854 – 55,975,740 | – | – | – |
25 | 17,590,025 – 17,598,054 | ENSBTAG00000019596 | GPRC5B | Protein coding |
ENSBTAG00000044092 | IQCK | Protein coding | ||
26 | 19,035,737 – 19,066,768 | – | – | – |
28 | 26,876,269 – 26,885,074 | – | – | – |
29 | 43,980,089 – 44,042,363 | ENSBTAG00000005069 | TM7SF2 | Protein coding |
ENSBTAG00000005073 | ZNHIT2 | Protein coding | ||
ENSBTAG00000005075 | MRPL49 | Protein coding | ||
ENSBTAG00000005076 | SYVN1 | Protein coding | ||
ENSBTAG00000015499 | VPS51 | Protein coding | ||
ENSBTAG00000020807 | FAU | Protein coding |