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Table 3 Genes located in QTL regions for meat tenderness in Nelore cattle

From: Sliding window haplotype approaches overcome single SNP analysis limitations in identifying genes for meat tenderness in Nelore cattle

BTA Position (bp) Genes Gene Name Gene type
1 6,317,864 – 6,324,488
1 125,981,534 – 126,011,455
3 7,371,235 – 7,460,489 ENSBTAG00000010158 NOS1AP Protein coding
3 29,474,206 – 29,610,884 ENSBTAG00000024319 LOC107132293 Pseudogene
ENSBTAG00000011322 HIPK1 Protein coding
ENSBTAG00000011327 OLFML3 Protein coding
3 90,594,180 – 90,664,268
3 93,949,186 – 94,067,553 ENSBTAG00000002910 ECHDC2 Protein coding
ENSBTAG00000003746 SCP2 Protein coding
ENSBTAG00000026032 FERD3L Protein coding
4 1,008,553
4 24,143,662 – 24,225,606 ENSBTAG00000010168
4 27,834,564 – 27,894,006 ENSBTAG00000039955 ZYG11A Protein coding
ENSBTAG00000046922 TWIST1 Protein coding
5 7,525,121 – 7,583,435 ENSBTAG00000009852 NAV3 Protein coding
5 18,434,417 – 18,465,179
8 92,216,117 – 92,289,515
9 1,116,610
9 12,339,368 – 12,406,450 - - -
9 21,441,424 – 21,497,606
9 61,168,282 – 61,197,874 ENSBTAG00000020713 BACH2 Protein coding
9 66,977,872 – 67,045,614 ENSBTAG00000020829 PTPRK Protein coding
9 100,716,451 – 100,721,452
10 20,448,593 – 20,541,764 ENSBTAG00000007800 TBC1D21 Protein coding
10 43,692,759 – 43,726,489 ENSBTAG00000020281 NIN Protein coding
11 5,751,331 – 5,768,629 ENSBTAG00000042179 U6 SnRNA
ENSBTAG00000046971 LOC107131213 Protein coding
11 43,129,117 – 43,135,745 ENSBTAG00000016534 BCL11A Protein coding
11 50,332,078 – 50,417,494 ENSBTAG00000006075 SUCLG1 Protein coding
ENSBTAG00000042444 U6 SnRNA
15 72,439,829 – 72,470,564 ENSBTAG00000037580 MSANTD3 Protein coding
17 70,788,438 – 70,935,589 ENSBTAG00000013150 THOC5 Protein coding
ENSBTAG00000013153 NF2 Protein coding
ENSBTAG00000013152 NIPSNAP1 Protein coding
ENSBTAG00000013147 NEFH Protein coding
18 14,849,540 – 14,991,573 ENSBTAG00000007096 GAS8 Protein coding
ENSBTAG00000025283 LOC101904595 Pseudogene
   ENSBTAG00000029640 U1 SnRNA
ENSBTAG00000033441 SHCBP1 Protein coding
24 47,570,379 – 47,596,815
24 48,585,933 – 48,632,298
24 55,868,854 – 55,975,740
25 17,590,025 – 17,598,054 ENSBTAG00000019596 GPRC5B Protein coding
ENSBTAG00000044092 IQCK Protein coding
26 19,035,737 – 19,066,768
28 26,876,269 – 26,885,074
29 43,980,089 – 44,042,363 ENSBTAG00000005069 TM7SF2 Protein coding
ENSBTAG00000005073 ZNHIT2 Protein coding
ENSBTAG00000005075 MRPL49 Protein coding
ENSBTAG00000005076 SYVN1 Protein coding
ENSBTAG00000015499 VPS51 Protein coding
ENSBTAG00000020807 FAU Protein coding