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Table 1 Functional genomic similarity under different subsets of FST based and randomly selected SNPs for the scenario when LDa between adjacent markers was equal to 0.7. Standard errors of Functional genomic similarity are listed between parentheses

From: Increasing accuracy of genomic selection in presence of high density marker panels through the prioritization of relevant polymorphisms

 

Genomic similarity

SNPs

FST based

Random

2.5 K

0.7013 (0.0020)

0.6695 (0.0003)

5 K

0.6862 (0.0020)

0.6687 (0.0003)

10 K

0.6752 (0.0010)

0.6682 (0.0002)

20 K

0.6718 (0.0006)

0.6678 (0.0001)

40K

0.6712 (0.0005)

0.6675 (0.0001)

80 K

0.6708 (0.0004)

0.6673 (0.0001)

160 K

0.6705 (0.0003)

0.6672 (0.0001)

400 K

0.6671 (0.0003)

0.6671 (0.0001)

  1. aLD linkage disequilibrium