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Table 2 Distribution of off-diagonal elements (OD) of the genomic relationships matrix corresponding to the training and validation individuals under different selection criteria of SNP markers (in %)

From: Increasing accuracy of genomic selection in presence of high density marker panels through the prioritization of relevant polymorphisms

 

20 K SNPs

40 K SNPs

80 K SNPs

400 K SNPs

Pedigree

S1

R2

S

R

S

R

-

-

OD < -0.05

15.47

1.79

7.30

1.64

2.42

0.66

0.11

0

-0.05 < OD < - 0.03

11.71

8.80

11.97

8.56

9.54

6.35

3.30

0

-0.03 < OD < - 0.01

14.96

23.79

19.60

23.93

23.16

24.72

24.43

0

-0.01 < OD < 0.01

16.19

32.57

22.98

33.1

30.78

37.96

45.91

60.09

0.01 < OD < 0.03

14.85

22.75

19.98

22.85

22.46

23.39

22.72

32.55

0.03 < OD < 0.05

11.54

8.26

11.62

8.02

9.09

5.96

3.15

5.25

OD > 0.05

15.28

2.04

7.25

1.90

2.56

0.95

0.39

2.11

  1. 1SNPs selected based on FSTscores; 2SNPs randomly selected