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Table 7 Compared the SSR loci associated with GT, GC and AC in this study and QTLs for GT, GC and AC reported in the previous studies

From: Favorable alleles mining for gelatinization temperature, gel consistency and amylose content in Oryza sativa by association mapping

Traits

NO.

SSR marker

Chr.

Start position (bp)a

End position (bp)a

QTL reported in the previous studies

Start position (bp)b

End position (bp)b

References

GT

1

RM232

3

8,409,404

8,410,886

   

2

RM267

5

21,881,317

21,881,455

26,848,154

28,906,633

Temnykh et al. (2001) [62]

3

RM264

8

27,926,632

27,926,652

6,779,215

20,733,138

Septiningsih et al. (2003) [13]

4

RM3600

9

17,107,752

17,107,843

   

GC

1

RM6712

3

35,020,004

35,020,027

   

2

RM5753

6

30,452,023

30,452,067

2,686,204

4,897,779

Lanceras et al. (2000) [19]

AC

1

RM6712

3

35,020,004

35,020,027

   

2

RM5753

6

30,452,023

30,452,067

30,822,884

3,459,750

McCouch et al. (2002) [63]

3

RM258

10

17,570,591

17,570,612

   

4

RM6327

11

364,257

364,310

   
  1. a,bThe SSR Marker and the QTL physical position (bp) was inferred from the Gremene (http://www.gramene.org/markers) and NCBI (https://www.ncbi.nlm.nih.gov/Blast.cgi) respectively