Table 1 In silico analysis of 25 flowering pathway genes collected from the Bolpangenome database for their protein length, chromosomal location (based on the Bolpangenome and EnsemblPlants database), and distribution of domains for each gene
Gene Name | ID | Protein (aa) | Chromosomal Location | Domains | |
|---|---|---|---|---|---|
Bolpangenome | Ensemblplants | ||||
BoFLC1.C9 | Bo9g173400 | 197 | C9:54424498–54,428,601 (+) | C9:51033935–51,038,038 (+) | MADS-box superfamily, K-box, MADS MEF2-like |
BoFLC3.C3 | Bo3g005470 | 197 | C3:2396772–2,400,061 (−) | C3:2126639–2,129,928 (−) | MADS-box, K-box, MADS MEF2-like |
BoFLC4.C3 | Bo3g100540 | 200 | C3:39412762–39,416,761 (−) | C3:35746750–35,750,749 (−) | MADS AFFECTING FLOWERING 5-like isoform X1, MADS-box, K-box |
BoFT.C5 | Bo5g025100 | 174 | C5: 9412613–9,414,217 (−) | C5: 8644739–8,646,343(−) | Phosphatidylethanolamine-binding protein |
BoFT.C8 | Bo8g104520 | 173 | C8: 39187856–39,190,040 (+) | C8: 36663547–36,665,731(+) | Phosphatidylethanolamine-binding protein |
BoSOC1.C3 | Bo3g038880 | 213 | C3: 17200121–17,202,561 (−) | C3: 15404837–15,407,277(−) | MADS MEF2-like |
BoSOC1.1.C4 | Bo4g024850 | 213 | C4: 4425685–4,428,128 (−) | C4: 4021498–4023,941(−) | MADS MEF2-like |
BoSOC1.2.C4 | Bo4g195720 | 213 | C4: 56667209–56,669,626 (−) | C4: 53015176–53,017,593(−) | MADS MEF2-like |
BoLFY.C2 | Bo2g161690 | 419 | C2: 54420229–54,422,778 (+) | C2: 50956976–50,959,525(+) | Floricaula/Leafy protein, MADS-box, SAM domain, DNA-binding C-terminal domain |
BoCO.C1 | Bo1g105550 | 386 | C1:34487516-34,488,935 (−) | C1: 32389932–32,391,351 (−) | B-box type zinc finger protein with CCT domain |
BoCO.C3 | Bo3g143010 | 416 | C3:55639220-55,641,018 (−) | C3: 51379117–51,380,915 (−) | Zinc finger protein CONSTANS-LIKE 14 |
BoCO.1.C4. | Bo4g002240 | 373 | C4:157832–159,255 (−) | C4: 153423–154,846 (−) | B-box type zinc finger protein with CCT domain |
BoCO.2.C4 | Bo4g156090 | 313 | C4:45306026–45,307,048 (+) | C4: 42763759–42,764,781 (+) | zinc finger protein CONSTANS-LIKE 3 |
BoCO.C5 | Bo5g073010 | 314 | C5:26092051-26,093,117 (−) | C5: 24568350–24,569,416 (−) | B-box type zinc finger protein with CCT domain |
BoCO.C9 | Bo9g163730 | 366 | C9:51326692-51,327,979 (+) | C9: 48282585–48,283,872 (+) | B-box type zinc finger protein with CCT domain |
BoVRN1.C1 | Bo1g115980 | 343 | C1:37054708–37,057,372 (+) | C1: 34825349–34,828,013 (+) | B3 domain-containing transcription factor VRN1 |
BoVRN2.C8 | Bo8g045980 | 437 | C8:16005186–16,007,664 (−) | C8: 15423858–15,426,336 (−) | VEFS-Box of polycomb protein |
BoVIN3.C3 | Bo3g095330 | 428 | C3:38317563-38,318,923 (+) | C3: 34746716–34,748,076 (+) | Oberon, PHD finger domain |
BoSVP.C4 | Bo4g149800 | 241 | C4:43101011–43,103,883 (+) | C4: 40723422–40,726,294 (+) | MADS-box protein SVP-like |
BoSVP.C8 | Bo8g101000 | 241 | C8:37659626–37,662,686 (−) | C8: 35302475–35,305,535 (−) | MADS-box protein SVP |
BoSPL.C2 | Bo2g062840 | 333 | C2:20199281–20,200,431 (+) | C2: 18471026–18,472,176 (+) | Squamosa promoter-binding-like protein 6 isoform X1 |
BoSPL.C4 | Bo4g042390 | 157 | C4:10309157–10,309,713 (−) | C4: 9471445–9,472,001 (−) | Squamosa promoter-binding-like protein |
BoSPL.1.C6 | Bo6g029290 | 183 | C6:7117888–7,118,508 (+) | C6: 6726669–6,727,289 (+) | Squamosa promoter-binding-like protein |
BoSPL.2.C6 | Bo6g031220 | 179 | C6:7920394–7,921,332 (+) | C6: 7482570–7,483,508 (+) | Squamosa promoter-binding-like protein |
BoSPL.C8 | Bo8g118210 | 335 | C8:44900056–44,901,763 (+) | C8: 41670596–41,672,303 (+) | Squamosa promoter binding protein-like protein 8 |