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Table 1 In silico analysis of 25 flowering pathway genes collected from the Bolpangenome database for their protein length, chromosomal location (based on the Bolpangenome and EnsemblPlants database), and distribution of domains for each gene

From: Molecular markers based on sequence variation in BoFLC1.C9 for characterizing early- and late-flowering cabbage genotypes

Gene Name ID Protein (aa) Chromosomal Location Domains
Bolpangenome Ensemblplants
BoFLC1.C9 Bo9g173400 197 C9:54424498–54,428,601 (+) C9:51033935–51,038,038 (+) MADS-box superfamily, K-box, MADS MEF2-like
BoFLC3.C3 Bo3g005470 197 C3:2396772–2,400,061 (−) C3:2126639–2,129,928 (−) MADS-box, K-box, MADS MEF2-like
BoFLC4.C3 Bo3g100540 200 C3:39412762–39,416,761 (−) C3:35746750–35,750,749 (−) MADS AFFECTING FLOWERING 5-like isoform X1, MADS-box, K-box
BoFT.C5 Bo5g025100 174 C5: 9412613–9,414,217 (−) C5: 8644739–8,646,343(−) Phosphatidylethanolamine-binding protein
BoFT.C8 Bo8g104520 173 C8: 39187856–39,190,040 (+) C8: 36663547–36,665,731(+) Phosphatidylethanolamine-binding protein
BoSOC1.C3 Bo3g038880 213 C3: 17200121–17,202,561 (−) C3: 15404837–15,407,277(−) MADS MEF2-like
BoSOC1.1.C4 Bo4g024850 213 C4: 4425685–4,428,128 (−) C4: 4021498–4023,941(−) MADS MEF2-like
BoSOC1.2.C4 Bo4g195720 213 C4: 56667209–56,669,626 (−) C4: 53015176–53,017,593(−) MADS MEF2-like
BoLFY.C2 Bo2g161690 419 C2: 54420229–54,422,778 (+) C2: 50956976–50,959,525(+) Floricaula/Leafy protein, MADS-box, SAM domain, DNA-binding C-terminal domain
BoCO.C1 Bo1g105550 386 C1:34487516-34,488,935 (−) C1: 32389932–32,391,351 (−) B-box type zinc finger protein with CCT domain
BoCO.C3 Bo3g143010 416 C3:55639220-55,641,018 (−) C3: 51379117–51,380,915 (−) Zinc finger protein CONSTANS-LIKE 14
BoCO.1.C4. Bo4g002240 373 C4:157832–159,255 (−) C4: 153423–154,846 (−) B-box type zinc finger protein with CCT domain
BoCO.2.C4 Bo4g156090 313 C4:45306026–45,307,048 (+) C4: 42763759–42,764,781 (+) zinc finger protein CONSTANS-LIKE 3
BoCO.C5 Bo5g073010 314 C5:26092051-26,093,117 (−) C5: 24568350–24,569,416 (−) B-box type zinc finger protein with CCT domain
BoCO.C9 Bo9g163730 366 C9:51326692-51,327,979 (+) C9: 48282585–48,283,872 (+) B-box type zinc finger protein with CCT domain
BoVRN1.C1 Bo1g115980 343 C1:37054708–37,057,372 (+) C1: 34825349–34,828,013 (+) B3 domain-containing transcription factor VRN1
BoVRN2.C8 Bo8g045980 437 C8:16005186–16,007,664 (−) C8: 15423858–15,426,336 (−) VEFS-Box of polycomb protein
BoVIN3.C3 Bo3g095330 428 C3:38317563-38,318,923 (+) C3: 34746716–34,748,076 (+) Oberon, PHD finger domain
BoSVP.C4 Bo4g149800 241 C4:43101011–43,103,883 (+) C4: 40723422–40,726,294 (+) MADS-box protein SVP-like
BoSVP.C8 Bo8g101000 241 C8:37659626–37,662,686 (−) C8: 35302475–35,305,535 (−) MADS-box protein SVP
BoSPL.C2 Bo2g062840 333 C2:20199281–20,200,431 (+) C2: 18471026–18,472,176 (+) Squamosa promoter-binding-like protein 6 isoform X1
BoSPL.C4 Bo4g042390 157 C4:10309157–10,309,713 (−) C4: 9471445–9,472,001 (−) Squamosa promoter-binding-like protein
BoSPL.1.C6 Bo6g029290 183 C6:7117888–7,118,508 (+) C6: 6726669–6,727,289 (+) Squamosa promoter-binding-like protein
BoSPL.2.C6 Bo6g031220 179 C6:7920394–7,921,332 (+) C6: 7482570–7,483,508 (+) Squamosa promoter-binding-like protein
BoSPL.C8 Bo8g118210 335 C8:44900056–44,901,763 (+) C8: 41670596–41,672,303 (+) Squamosa promoter binding protein-like protein 8