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Table 1 2DL DEG between R and S NIL that were further characterized by RT-qPCR

From: Identification and mapping of expressed genes associated with the 2DL QTL for fusarium head blight resistance in the wheat line Wuhan 1

2DL DEG Name (IWGSC release 2.25) Annotation IWGSC RefSeq v1.0e Expression pattern RT-qPCR characterization
Name Start End In 3 pairs of NIL In Wuhan 1, Nyubai In DH population
Traes_2DL_03CAA3B80a copper-transporting ATPase PAA2, chloroplastic TraesCS2D01G495500LC 493,192,302 493,195,914 2 yes yes yes
Traes_2DL_0A96AAC5Ba Sodium transporter protein TraesCS2D02G428300 540,161,984 540,166,078 24 yes   
Traes_2DL_0AB0ABFD5 Malate synthase TraesCS2D02G344200 440,325,740 440,328,360 27 yes   
Traes_2DL_179570792a WD-40 repeat family protein TraesCS2D02G440500 550,630,373 550,636,721 1 yes yes yes
Traes_2DL_3BBD24259a Smr domain-containing protein TraesCS2D02G415100 529,007,465 529,012,316 12 yes   
Traes_2DL_3F691BC13 Receptor kinase TraesCS2D02G599300 650,752,287 650,757,581 9 yes   
Traes_2DL_44552FCF2 DnaJ / Sec63 Brl domains-containing protein TraesCS2D02G275600 345,248,090 345,248,281 23 yes   
Traes_2DL_7B0056729 Serine incorporator TraesCS2D02G347800 445,890,982 445,897,188 20 yes   
Traes_2DL_848E9C4A6a Heat shock transcription factor TraesCS2D02G399000 512,041,712 512,043,335 36 yes   
Traes_2DL_89A313AC3 Glycin-rich RNA-binding protein TraesCS2D02G302400 385,568,830 385,570,145 28 yes yes  
Traes_2DL_BB6F31152 Receptor protein kinase TraesCS2D02G248200 291,952,536 291,956,775 9 yes   
Traes_2DL_E301DD433a BTB/POZ and TAZ domain-containing protein 2 TraesCS2D02G339900 434,138,340 434,140,330 31 yes   
Traes_2DL_F784FBAA3a 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase TraesCS2D02G392900 500,791,603 500,793,692 24 yes   
Traes_2DL_07F08C844a,b cysteine-rich/transmembrane domain A-like protein TraesCS2D02G417400 531,711,723 531,712,483 23   yes yes
Traes_2DL_37D967CFCa,b CC-NBS-LRR protein TraesCS2D02G380500 484,858,484 484,862,886 23   yes yes
Traes_2DL_382370E3B Pectinesterase TraesCS2D02G322500 413,777,752 413,779,866 18   yes yes
Traes_2DL_5642F7EAC Receptor-like protein kinase TraesCS2D02G263100 320,280,150 320,283,723 10   yes  
Traes_2DL_647B61E84 1,4-alpha-glucan-branching enzyme TraesCS2D02G290800 372,924,177 372,935,106 7   yes  
Traes_2DL_892F83E0B Sec14p-like phosphatidylinositol transfer protein TraesCS2D02G335700 429,053,162 429,057,812 18   yes  
Traes_2DL_8A90A6C4Fa Ankyrin repeat protein TraesCS2D02G395500 506,771,094 506,784,989 39   yes  
Traes_2DL_8F75414FD Protein kinase TraesCS2D02G301200 383,845,349 383,849,177 9   yes  
Traes_2DL_A208876FE Elongation factor 1-alpha TraesCS2D02G320200 411,416,487 411,417,559 5   yes yes
Traes_2DL_B7ABC1CB9a,b Hypoxia-responsive protein TraesCS2D02G438000 547,762,760 547,764,965 23   yes yes
Traes_2DL_BA1B746DF MLP protein TraesCS2D02G328200 421,480,422 421,481,366 9   yes  
Traes_2DL_EDAEA1357a,b Acidic endochitinase TraesCS2D02G450600 560,399,016 560,400,258 31   yesg  
Traes_2DL_FA7A15F63 Glycerophosphodiester phosphodiesterase TraesCS2D02G332500 425,740,309 425,746,371 10   yes  
UN25696c,d Uncharacterized protein (No gene model)f 446,264,922 446,266,534   yes yes yes
TaWRKYc Traes_2DL_B8483F711 WRKY transcription factor TraesCS2D02G489700 588,676,152 588,677,693    yes yes
TaACTc,d Agmatine coumaroyltransferase-2 TraesCS2D02G490400 589,282,163 589,283,855    yes yes
NPR1-likec Traes_2DL_14C8A084C Receptor-like protein kinase TraesCS2D02G572000 638,143,208 638,148,768    yes yes
  1. aDEG physically located in 5 LOD interval for FHB resistance 2DL QTL, based on IWGSC RefSeq v1.0 [38, 47]
  2. bDEG with log2 FC > 1.5/<−1.5 for Wuhan 1/Nyubai at 2dai with F. graminearum
  3. cGenes proposed to contribute to the 2DL QTL for FHB resistance in literature [31, 33, 48]
  4. dNot annotated in Wheat Genome IWGSC release 2.25
  5. eBest BLAST hit in IWGSC RefSeq v1.0 [38, 47]
  6. f Not annotated in Wheat Genome IWGSC RefSeq v1.0 [38, 47]
  7. gNo expression was detected by RT-qPCR