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Table 1 Detailed information of six SNPs identified in PRKG1 gene

From: A post-GWAS confirming effects of PRKG1 gene on milk fatty acids in a Chinese Holstein dairy population

SNP name

Location

Position (UMD 3.1.1)

GenBank no.

Genotype

NO.

Frequency

Allele

Frequency

g.8344262A > T

5′ flanking region

Chr26:8344262

rs109571301

AA

508

0.4824

A

0.6876

AT

432

0.4103

T

0.3124

TT

113

0.1073

  

g.6904047G > T

3′ UTR

Chr26:6904047

rs478962267

GG

500

0.6729

G

0.8203

GT

219

0.2948

T

0.1797

TT

24

0.0323

  

g.6903810G > A

3′ UTR

Chr26:6903810

rs444193880

AA

23

0.0219

A

0.1237

AG

214

0.2036

G

0.8763

GG

814

0.7745

  

g.6903365C > A

3′ UTR

Chr26:6903365

rs42630538

AA

116

0.1950

A

0.2504

CC

413

0.6941

C

0.7496

CA

66

0.1109

  

g.6902878 T > G

3′ UTR

Chr26:6902878

rs136888798

GG

221

0.3778

G

0.3812

GT

4

0.0068

T

0.6188

TT

360

0.6154

  

g.6901713 T > G

3′ flanking region

Chr26:6901713

rs381717383

GG

30

0.0286

G

0.1778

GT

313

0.2984

T

0.8222

TT

706

0.6730

  
  1. Note: UTR Untranslated region