Genome-wide association analysis for β-hydroxybutyrate concentration in Milk in Holstein dairy cattle

Nayeri, S.; Schenkel, F.; Fleming, A.; Kroezen, V.; Sargolzaei, M.; Baes, C.; Cánovas, A.; Squires, J.; Miglior, F.

doi:10.1186/s12863-019-0761-9

BMC Genomic Data

Table 1 List of candidate genes and corresponding significant identified SNPs within or very close (±100 kb) to the SNPs for subclinical ketosis in first lactation (SCK1)

From: Genome-wide association analysis for β-hydroxybutyrate concentration in Milk in Holstein dairy cattle

SNP_name	Rs_snp_name	chromosome	position	Ensembl_gene _id	Entrez_gene_id
BovineHD0600024204; BovineHD0600024173; BovineHD0600024179; BovineHD0600024201	rs110246305; rs134989847; rs109811572; rs109901151	6	88498400; 88433671; 88441084; 88494442	ENSBTAG00000002348	SLC4A4
BovineHD0600025613	rs109510145	6	92951049	ENSBTAG00000004921	FAM47E
Hapmap44452-BTA-22099	rs41606699	6	89399736	ENSBTAG00000006507	ADAMTS3
BovineHD0600024406	rs137844449	6	89050323	ENSBTAG00000009070	NPFFR2
BovineHD0600026322	rs110306794	6	94884203	ENSBTAG00000010716	FRAS1
BovineHD0600024752; BovineHD0600024746	rs110185652; rs135247183	6	90382995; 90371709	ENSBTAG00000011935	RASSF6
BovineHD0600024291; BovineHD0600024289; BovineHD0600024294;BovineHD0600024290	rs109547247; rs110310151; rs137023501; rs43338561	6	88732184; 88728581; 88735599; 88730717	ENSBTAG00000013718	GC
BovineHD0600024791	rs109793149	6	90557327	ENSBTAG00000019716	CXCL8
BovineHD0600024925; BovineHD0600024923	rs110789319; rs133534783	6	90982259; 90977968	ENSBTAG00000043960	MTHFD2L
BovineHD0600024204; BovineHD0600024173; BovineHD0600024179; BovineHD0600024201	rs110246305; rs134989847; rs109811572; rs109901151	6	88498400; 88433671; 88441084; 88494442	ENSBTAG00000002348	SLC4A4
BovineHD0600025613	rs109510145	6	92951049	ENSBTAG00000004921	FAM47E
Hapmap44452-BTA-22099	rs41606699	6	89399736	ENSBTAG00000006507	ADAMTS3
BovineHD0600024406	rs137844449	6	89050323	ENSBTAG00000009070	NPFFR2
BovineHD0600026322	rs110306794	6	94884203	ENSBTAG00000010716	FRAS1
BovineHD0600024752; BovineHD0600024746	rs110185652; rs135247183	6	90382995; 90371709	ENSBTAG00000011935	RASSF6
BovineHD0600024291; BovineHD0600024289; BovineHD0600024294;BovineHD0600024290	rs109547247; rs110310151; rs137023501; rs43338561	6	88732184; 88728581; 88735599; 88730717	ENSBTAG00000013718	GC
BovineHD0600024791	rs109793149	6	90557327	ENSBTAG00000019716	CXCL8
BovineHD0600024925; BovineHD0600024923	rs110789319; rs133534783	6	90982259; 90977968	ENSBTAG00000043960	MTHFD2L

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ISSN: 2730-6844

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