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Fig. 1 | BMC Genetics

Fig. 1

From: Genome-wide association analysis of egg production performance in chickens across the whole laying period

Fig. 1

Manhattan and Q-Q plots derived from GWASs for AFE and EN3. Each dot on this figure corresponds to a SNP within the dataset, while the horizontal red and black lines denote the genome-wide significance (1.58e-6) and suggestive significance thresholds (3.17e-5), respectively. The Manhattan plot contains -log10 observed P-values for genome-wide SNPs (y-axis) plotted against their corresponding position on each chromosome (x-axis), while the Q-Q plot contains expected -log10-transformed P-values plotted against observed -log10-transformed P-values. GIF denotes the genomic inflation factor indicating the degree of population stratification

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