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Table 1 PCR amplification bands (non-recombinant bands) in COC, BSB, IDC-F1, IDMC-F1, IDMC-F2, IDC-F2-C, and IDC-F2-M

From: Rapid genomic DNA variation in newly hybridized carp lineages derived from Cyprinus carpio (♀) × Megalobrama amblycephala (♂)

GenesSpeciesLocusSize (bp)Exon 1 (bp)Intron (bp)Exon 2 (bp)
HoxA4aCOCHoxA4ai117789–500501–970971–1177
HoxA4aii118289–500501–975976–1182
BSBHoxA4a-BSB118889–500501–981982–1188
IDC-F1HoxA4ai117789–500501–970971–1177
HoxA4aii118289–500501–975976–1182
HoxA4aiii118489–500501–977978–1184
HoxA4a-1118189–500501–974975–1181
HoxA4a-BSB118889–500501–981982–1188
IDMC-F1HoxA4ai117789–500501–970971–1177
HoxA4aii118289–500501–975976–1182
IDMC-F2HoxA4ai117789–500501–970971–1177
HoxA4aii118289–500501–975976–1182
IDC-F2-CHoxA4ai117789–500501–970971–1177
HoxA4aii118289–500501–975976–1182
IDC-F2-MHoxA4ai117789–500501–970971–1177
HoxA4aii118289–500501–975976–1182
HoxA9aCOCHoxA9ai8171–381382–620621–817
HoxA9aii8911–381382–694695–891
BSBHoxA9b8791–381382–682683–879
IDC-F1HoxA9ai8171–381382–620621–817
HoxA9aii8671–381382–670671–867
IDMC-F1HoxA9ai8171–381382–620621–817
IDMC-F2HoxA9ai8171–381382–620621–817
IDC-F2-CHoxA9ai8171–381382–620621–817
HoxA9aii8911–381382–694695–891
IDC-F2-MHoxA9ai8171–381382–620621–817
HoxA2bCOCHoxA2bi14901–314315–905906–1490
HoxA2bii14751–314315–890891–1475
BSBHoxA2b14791–311312–894895–1479
IDC-F1HoxA2bi14901–314315–905906–1490
HoxA2bii14751–314315–890891–1475
HoxA2biii14861–314315–901902–1486
HoxA2b-114481–314315–863864–1448
IDMC-F1HoxA2bi14901–314315–905906–1490
HoxA2bii14751–314315–890891–1475
IDC-F2-CHoxA2bi14901–314315–905906–1490
HoxA2bii14751–314315–890891–1475
IDC-F2-MHoxA2bi14901–314315–905906–1490
HoxA2bii14751–314315–890891–1475
IDMC-F2HoxA2bi14901–314315–905906–1490
HoxA2bii14751–314315–890891–1475
HoxA11bCOCHoxA11bi14403–590591–13421343–1440
BSBHoxA11b-BSB17033–602603–16051606–1703
IDC-F1HoxA11bi14403–590591–13421343–1440
HoxA11bii14013–590591–13031304–1401
IDMC-F1HoxA11bi14393–590591–13421343–1439
IDMC-F2HoxA11bi14393–590591–13421343–1439
IDC-F2-CHoxA11bi14403–590591–13421343–1440
IDC-F2-MHoxA11bi14403–590591–13421343–1440
HoxB1aCOCHoxB1aiψ1510
HoxB1aii15261–462463–12501251–1526
BSBHoxB1a15221–459460–12461247–1522
IDC-F1HoxB1aiψ1510
HoxB1aiii14841–450451–12081209–1484
IDMC-F1HoxB1aiψ1510
HoxB1aii15251–462463–12491250–1525
IDMC-F2HoxB1aiψ1510
IDC-F2-CHoxB1aiψ1510
IDC-F2-MHoxB1aiψ1510
HoxB4aψCOCHoxB4aiψ1631
BSBHoxB4aψ1617
IDC-F1HoxB4aiψ1630
HoxB4aiiψ1613
IDMC-F1HoxB4aiψ1630
IDMC-F2HoxB4aiψ1630
IDC-F2-CHoxB4aiψ1630
IDC-F2-MHoxB4aiψ1630
HoxB1bCOCHoxB1bi7311–477478–565566–731
BSBHoxB1b-BSB7511–477478–585586–751
IDC-F1HoxB1bi7311–477478–565566–731
HoxB1bii7331–477478–567568–733
HoxB1b-BSB7511–477478–585586–751
IDMC-F1HoxB1bi7311–477478–565566–731
IDMC-F2HoxB1bi7311–477478–565566–731
IDC-F2-CHoxB1bi7311–477478–565566–731
IDC-F2-MHoxB1bi7311–477478–565566–731
HoxB5bCOCHoxB5bi11911–561562–985986–1191
HoxB5bii11901–564565–984985–1190
BSBHoxB5b-BSB12271–564565–10211022–1227
IDC-F1HoxB5bi11911–561562–985986–1191
HoxB5bii11901–564565–984985–1190
HoxB5biii11961–561562–990991–1196
HoxB5b-BSB12261–564565–10201021–1226
IDMC-F1HoxB5bi11911–561562–985986–1191
HoxB5bii11901–564565–984985–1190
IDMC-F2HoxB5bi11911–561562–985986–1191
IDC-F2-CHoxB5bi11901–561562–984985–1190
HoxB5bii11901–564565–984985–1190
IDC-F2-MHoxB5bi11901–561562–984985–1190
HoxB5bii11901–564565–984985–1190
HoxC4aCOCHoxC4ai11691–410411–928929–1169
HoxC4aii11761–410411–935936–1176
BSBHoxC4a11251–410411–933934–1125
IDC-F1HoxC4ai11691–410411–928929–1169
HoxC4aii11761–410411–935936–1176
HoxC4aiii11731–410411–932933–1173
HoxC4a-111791–410411–938939–1179
IDMC-F1HoxC4ai11691–410411–928929–1169
HoxC4aii11761–410411–935936–1176
IDMC-F2HoxC4ai11681–410411–928929–1168
HoxC4aii11741–410411–934935–1174
IDC-F2-CHoxC4ai11691–410411–928929–1169
HoxC4aii11761–410411–935936–1176
IDC-F2-MHoxC4ai11691–410411–928929–1169
HoxC4aii11751–410411–934935–1175
HoxC6bCOCHoxC6bi9422–392393–763764–942
BSBHoxC6b-BSB9222–392393–737738–922
IDC-F1HoxC6bi9492–392393–763764–949
HoxC6bii9642–392393–778779–964
HoxC6b-BSB9232–392393–737738–923
IDMC-F1HoxC6bi9492–392393–763764–949
IDMC-F2HoxC6bi9492–392393–763764–949
IDC-F2-CHoxC6bi9492–392393–763764–949
IDC-F2-MHoxC6bi9492–392393–763764–949
HoxD4aCOCHoxD4ai9421–315316–717718–942
HoxD4aii9441–315316–719720–944
BSBHoxD4a-BSB9111–306307–686687–911
IDC-F1HoxD4ai9421–315316–717718–942
HoxD4aii9441–315316–719720–944
HoxD4aiii9521–315316–727728–952
HoxD4a-19371–315316–712713–937
HoxD4a-29601–315316–735736–960
HoxD4a-BSB9111–306307–686687–911
IDMC-F1HoxD4ai9421–315316–717718–942
HoxD4aii9441–315316–719720–944
IDMC-F2HoxD4ai9421–315316–717718–942
HoxD4aii9441–315316–719720–944
IDC-F2-CHoxD4ai9421–315316–717718–942
HoxD4aii9441–315316–719720–944
IDC-F2-MHoxD4ai9421–315316–717718–942
HoxD4aii9441–315316–719720–944
HoxD10aCOCHoxD10ai15511–589590–13211322–1551
HoxD10aii15461–592593–13161317–1546
BSBHoxD10a-BSB15741–592593–13441345–1574
IDC-F1HoxD10ai15541–589590–13241325–1554
HoxD10aii15461–592593–13161317–1546
HoxD10aiii14951–592593–12651266–1495
HoxD10a-114801–592593–12501251–1480
HoxD10a-BSB15741–592593–13441345–1574
IDMC-F1HoxD10ai15541–589590–13241325–1554
HoxD10aii15461–592593–13161317–1546
IDMC-F2HoxD10ai15541–589590–13241325–1554
HoxD10aii15461–592593–13161317–1546
IDC-F2-CHoxD10ai15541–589590–13241325–1554
HoxD10aii15461–592593–13161317–1546
IDC-F2-MHoxD10ai15541–589590–13241325–1554
HoxD10aii15441–592593–13141315–1544
  1. Ψdenotes a pseudogene