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Table 2 PCR amplification bands (recombinant bands) in COC, BSB, IDC-F1, IDMC-F1, IDMC-F2, IDC-F2-C, and IDC-F2-M

From: Rapid genomic DNA variation in newly hybridized carp lineages derived from Cyprinus carpio (♀) × Megalobrama amblycephala (♂)

GenesSpeciesLocusSize (bp)Exon1 (bp)Intron (bp)Exon2 (bp)
HoxA4aIDC-F1HoxA4ai + HoxA4aii118289–500501–975976–1182
HoxA4aii + HoxA4a-1 + HoxA4ai118289–500501–975976–1182
HoxA4ai + HoxA4aiii118489–500501–977978–1184
HoxA4ai + HoxA4a-BSB118889–500501–981982–1188
HoxA4ai + HoxA4a-BSB + HoxA4ai118289–500501–975976–1182
HoxA4a-BSB + HoxA4ai1182/118889–500501–975/981976/982–1182/1188
HoxA4a-BSB + HoxA4aii118889–500501–981982–1188
IDMC-F1HoxA4aii + HoxA4ai118289–500501–975976–1182
IDMC-F2HoxA4aii + HoxA4ai118289–500501–975976–1182
HoxA4ai + HoxA4aii118289–500501–975976–1182
IDC-F2-CHoxA4aii + HoxA4ai1177/118289–500501–970/975971/976–1177/1182
HoxA4ai + HoxA4aii1177/118289–500501–970/975971/976–1177/1182
IDC-F2-MHoxA4ai + HoxA4aii1177/118289–500501–970/975971/976–1177/1182
HoxA9aIDMC-F2HoxA9ai + HoxA9aii8911–381382–694695–891
HoxA2bIDC-F1HoxA2bi + HoxA2bii14901–314315–905906–1490
IDMC-F2HoxA2bi + HoxA2bii14901–314315–905906–1490
IDC-F2-CHoxA2bii + HoxA2bi14751–314315–890891–1475
IDC-F2-MHoxA2bii + HoxA2bi14751–314315–890891–1475
HoxA11bIDMC-F2HoxA11bi + HoxA11b-BSB + HoxA11bi1439/14553–590/605591/606–1342/13581343/1359–1439/1455
IDC-F2-MHoxA11bi + HoxA11b-BSB + HoxA11bi14553–605606–13571358–1455
HoxB1aIDC-F2-MHoxB1ai + HoxB1aiiψ15101–462463–12341235–1510
HoxB1aii + HoxB1aiψ15031–462463–12271228–1503
HoxB5bIDC-F1HoxB5bi + HoxB5bii + HoxB5bi11901–564565–984985–1190
HoxB5bi + HoxB5bii11901–564565–984985–1190
IDMC-F1HoxB5bii + HoxB5bi11941–564565–988989–1194
IDMC-F2HoxB5bi + HoxB5bii11871–561562–981982–1187
HoxB5bii + HoxB5bi + HoxB5bii11941–564565–988989–1194
IDC-F2-CHoxB5bii + HoxB5bi11901–561562–984985–1190
IDC-F2-MHoxB5bii + HoxB5bi11901–564565–984985–1190
HoxB5bi + HoxB5bii11881–561562–982983–1188
HoxC4aIDC-F1HoxC4aii + HoxC4ai11741–410411–933934–1174
HoxC4aii + HoxC4aiii11731–410411–932933–1173
IDMC-F1HoxC4aii + HoxC4aiψ11691–410411–928929–1169
IDMC-F2HoxC4ai + HoxC4aii1168/11751–410411–928/935929/936–1168/1175
HoxC4aii + HoxC4ai11681–410411–928929–1168
IDC-F2-CHoxC4ai + HoxC4aii1169/11751–410411–928/934929/935–1169/1175
HoxC4aii + HoxC4ai11691–410411–928929–1169
HoxC4ai + HoxC4aii + HoxC4ai11751–410411–934935–1175
IDC-F2-MHoxC4ai + HoxC4aii11751–410411–934935–1175
HoxC4aii + HoxC4ai11751–410411–934935–1175
HoxD4aIDC-F1HoxD4aiii + HoxD4a-19371–315316–712713–937
IDMC-F1HoxD4ai + HoxD4aii9441–315316–719720–944
IDMC-F2HoxD4ai + HoxD4aii9441–315316–719720–944
HoxD4aii + HoxD4ai9421–315316–717718–942
IDC-F2-CHoxD4ai + HoxD4aii + HoxD4ai9361–314315–711712–936
IDC-F2-MHoxD4aii + HoxD4ai937/9441–315316–712/719713/720–937/944
HoxD4ai + HoxD4aii + HoxD4ai9371–315316–712713–937
HoxD4aii + HoxD4ai + HoxD4aii + HoxD4ai9371–315316–712713–937
HoxD10aIDC-F1HoxD10aii + HoxD10ai15541–589590–13241325–1554
HoxD10ai + HoxD10a-114941–588589–12641265–1494
IDMC-F1HoxD10aii + HoxD10ai15451–592593–13151316–1545
IDMC-F2HoxD10aii + HoxD10ai1542/15581–592593–1312/13291313/1330–1542/1558
IDC-F2-CHoxD10aii + HoxD10ai15561–592593–13261327–1556
HoxD10ai + HoxD10aii + HoxD10ai15451–592593–13151316–1545
IDC-F2-MHoxD10ai + HoxD10aii1544/15541–589590–1314/13241315/1325–1544/1554
  1. Ψdenotes a pseudogene