Skip to main content

Table 3 Percentage nucleotide identity (on the left) and percentage amino acid identity (on the right) between duplicated Hox coding regions in COC, BSB, IDC-F1, IDMC-F1, IDMC-F2, IDC-F2-C, and IDC-F2-M (following the format below)

From: Rapid genomic DNA variation in newly hybridized carp lineages derived from Cyprinus carpio (♀) × Megalobrama amblycephala (♂)

 

HoxA4a (%)

HoxA9a (%)

HoxA2b (%)

HoxA11b (%)

HoxB1a (%)

HoxB4a (%)

HoxB1b (%)

HoxB5b (%)

HoxC4a (%)

HoxC6b (%)

HoxD4a (%)

HoxD10a (%)

IDC-F1 i: IDC-F1 ii

94.5/98.5

81.8/88.5

93.7/97.6

88.9/96.0

92.3/P

94.8/95.7

94.1/96.4

98.0/99.0

92.1/98.4

90.7/96.6

88.0/97.0

: IDC-F1 iii

93.0/98.5

96.1/97.9

91.5/P

94.8/96.0

98.5/98.6

86.9/94.9

85.8/96.3

: IDC-F1 (1)

96.4/98.0

90.1/95.9

97.5/99.0

98.5/99.4

90.3/97.4

: IDC-F1 (2)

89.1/95.5

: IDC-F1 (BSB)

92.3/98.5

86.2/91.1

89.4/97.2

83.4/97.3

87.8/94.9

81.3/96.7

: IDMC-F1 i

100.0/100.0

99.8/100.0

99.5/98.9

99.8/99.8

99.6/P

99.7/P

100.0/100.0

100.0/100.0

100.0/100.0

100.0/100.0

99.8/99.4

99.9/100.0

: IDMC-F1 ii

94.6/98.5

93.8/97.3

88.1/P

94.3/96.8

97.9/98.6

90.8/97.2

88.3/97.4

: IDMC-F2 i

100.0/100.0

100.0/100.0

99.6/98.9

99.7/99.7

99.5/P

99.6/P

100.0/100.0

100.0/100.0

99.9/100.0

99.8/100.0

99.8/99.4

99.6/99.6

: IDMC-F2 ii

94.5/98.5

93.7/97.3

97.7/98.6

90.9/97.2

88.4/97.4

: IDC-F2-C i

99.7/99.0

99.8/100.0

99.6/98.6

99.9/100.0

99.4/P

99.7/P

100.0/100.0

99.8/100.0

100.0/100.0

99.8/100.0

99.7/98.8

100.0/100.0

: IDC-F2-C ii

94.5/98.5

80.1/86.9

93.7/97.6

94.3/96.8

98.0/99.0

90.9/97.2

88.5/97.4

: IDC-F2-M i

99.9/100.0

99.8/100.0

99.7/99.3

100.0/100.0

99.5/P

99.7/P

100.0/100.0

99.8/100.0

99.9/100.0

99.8/100.0

99.7/99.4

99.9/100.0

: IDC-F2-M ii

94.2/98.5

93.7/97.6

94.3/96.4

97.9/99.0

90.8/96.6

88.2/97.0

: COC i

99.8/99.0

100.0/100.0

99.6/99.3

99.8/99.7

99.5/P

99.8/P

99.5/100.0

99.9/100.0

99.9/100.0

99.1/98.9

99.6/98.8

99.2/98.5

: COC ii

94.5/98.0

80.2/88.5

93.8/97.6

88.2/P

94.1/96.4

98.0/99.0

90.8/97.2

88.3/97.4

: BSB

92.3/98.5

77.3/85.4

94.9/96.9

74.2/94.5

86.7/P

85.9/P

86.2/91.1

89.9/97.6

93.4/91.6

83.3/97.3

87.8/94.9

81.4/97.0

IDC-F1 ii: IDC-F1 iii

96.2/99.5

92.6/97.6

93.2/95.7

98.4/99.5

92.7/96.0

87.9/95.6

: IDC-F1 (1)

93.5/97.5

92.3/96.3

98.7/100.0

90.8/97.2

84.0/96.7

: IDC-F1 (2)

86.0/94.4

: IDC-F1 (BSB)

92.2/98.0

86.4/89.7

90.0/96.0

81.3/96.3

86.2/93.8

81.0/96.3

: IDMC-F1 i

94.5/98.5

81.9/88.5

93.7/97.9

88.8/95.9

92.3/P

94.8/95.7

94.1/96.4

98.0/99.0

92.1/98.4

90.8/97.2

88.1/97.0

: IDMC-F1 ii

99.7/100.0

99.7/99.6

99.1/99.6

99.9/99.5

99.4/99.4

99.2/98.9

: IDMC-F2 i

94.5/98.5

81.8/88.5

93.7/97.9

88.9/96.0

92.3/P

94.8/95.7

94.1/96.4

97.9/99.0

92.0/98.4

90.8/97.2

87.8/97.4

: IDMC-F2 ii

99.8/100.0

99.5/99.6

99.6/99.5

99.5/99.4

99.4/99.6

: IDC-F2-C i

94.4/97.5

81.9/88.5

93.7/97.6

88.9/96.0

92.3/P

94.8/95.7

93.9/96.4

98.0/99.0

92.0/98.4

90.7/96.6

88.0/97.0

: IDC-F2-C ii

99.8/100.0

92.6/95.8

99.5/100.0

99.3/99.6

100.0/100.0

99.5/99.4

99.4/99.6

: IDC-F2-M i

94.6/98.5

81.9/88.5

93.9/98.3

88.9/96.0

92.3/P

94.8/95.7

94.1/96.4

98.1/99.0

92.0/98.4

90.7/97.2

88.0/97.0

: IDC-F2-M ii

99.5/100.0

99.5/100.0

99.1/99.2

99.8/100.0

99.4/98.8

99.2/99.2

: COC i

94.5/98.5

81.8/88.5

93.9/98.3

88.9/95.9

92.2/P

94.6/95.7

94.0/96.4

98.1/99.0

91.5/97.3

90.8/96.6

87.6/96.3

: COC ii

99.6/99.5

92.1/95.3

99.7/100.0

99.1/99.2

100.0/100.0

99.3/99.4

99.5/99.6

: BSB

92.2/98.0

81.0/90.1

94.9/97.3

71.6/91.6

85.4/P

86.4/89.7

90.4/96.4

93.3/92.5

81.4/96.3

86.2/93.8

81.1/96.7

IDC-F1 iii: IDC-F1 (1)

92.0/97.0

89.8/96.3

98.3/99.5

86.9/95.5

84.6/98.1

: IDC-F1 (2)

86.0/96.0

: IDC-F1 (BSB)

90.8/97.5

88.7/95.7

84.1/92.7

78.4/95.2

: IDMC-F1 i

93.0/98.5

96.1/98.3

91.2/P

94.8/96.0

98.5/98.6

87.0/95.5

85.7/96.3

: IDMC-F1 ii

96.2/99.5

92.6/97.3

84.7/92.6

93.4/96.0

98.3/99.0

92.8/96.6

88.2/95.9

: IDMC-F2 i

93.0/98.5

96.2/98.3

91.2/P

94.8/96.0

98.4/98.6

87.0/95.5

85.7/96.7

: IDMC-F2 ii

96.2/99.5

92.5/97.3

98.2/99.0

92.9/96.6

88.2/95.9

: IDC-F2-C i

92.7/97.5

96.2/97.9

91.1/P

94.8/96.0

98.5/98.6

86.9/94.9

85.8/96.3

: IDC-F2-C ii

96.2/99.5

92.5/97.6

93.5/96.0

98.4/99.5

92.9/96.6

88.2/95.9

: IDC-F2-M i

92.9/98.5

96.3/98.6

91.2/P

94.6/96.0

98.6/98.6

86.9/95.5

85.8/96.3

: IDC-F2-M ii

95.9/99.5

92.5/97.6

93.4/95.7

98.3/99.5

92.8/96.0

88.1/95.6

: COC i

93.0/98.0

96.2/98.6

91.2/P

94.7/96.0

98.6/98.6

87.0/94.9

85.4/95.6

: COC ii

96.2/99.0

92.6/97.6

84.9/92.6

93.4/95.7

98.4/99.5

92.7/96.6

88.1/95.9

: BSB

90.8/97.5

93.5/97.3

83.4/94.2

88.8/96.0

93.3/92.1

84.1/92.7

78.5/95.6

IDC-F1 (1): IDC-F1 (2)

88.8/96.0

: IDC-F1 (BSB)

91.3/97.5

87.8/95.5

78.1/96.3

: IDMC-F1 i

96.4/98.0

90.1/96.3

97.5/99.0

98.6/100.0

90.3/97.4

: IDMC-F1 ii

93.5/97.5

92.4/95.9

98.6/99.5

90.9/97.7

84.2/97.0

: IDMC-F2 i

96.4/98.0

90.2/96.3

97.4/99.0

98.6/100.0

90.2/97.8

: IDMC-F2 ii

93.5/97.5

92.3/95.9

98.3/99.5

91.0/97.7

84.2/97.0

: IDC-F2-C i

96.1/97.0

90.2/95.9

97.5/99.0

98.5/99.4

90.3/97.4

: IDC-F2-C ii

93.5/97.5

92.3/96.3

98.7/100.0

91.0/97.7

84.3/97.0

: IDC-F2-M i

96.3/98.0

90.3/96.6

97.6/99.0

98.5/100.0

90.3/97.4

: IDC-F2-M ii

93.2/97.5

92.3/96.3

98.5/100.0

90.9/97.2

84.1/96.7

: COC i

96.4/98.0

90.2/96.6

97.6/99.0

98.6/99.4

90.1/96.7

: COC ii

93.5/97.0

92.4/96.3

98.7/100.0

90.9/97.7

84.2/97.0

: BSB

91.3/97.5

91.0/96.3

93.4/92.5

87.8/95.5

78.2/96.7

IDC-F1 (2): IDC-F1 (BSB)

83.5/94.4

: IDMC-F1 i

89.2/96.0

: IDMC-F1 ii

86.2/94.9

: IDMC-F2 i

89.2/96.0

: IDMC-F2 ii

86.3/94.9

: IDC-F2-C i

89.1/95.5

: IDC-F2-C ii

86.3/94.9

: IDC-F2-M i

89.1/96.0

: IDC-F2-M ii

86.2/94.4

: COC i

89.2/95.5

: COC ii

86.1/94.9

: BSB

83.5/94.4

IDC-F1 (BSB): IDMC-F1 i

92.3/98.5

86.2/91.1

89.4/97.2

83.4/97.3

87.9/95.5

81.4/96.7

: IDMC-F1 ii

92.3/98.0

90.0/96.4

86.5/94.4

81.3/96.7

: IDMC-F2 i

92.3/98.5

86.2/91.1

89.4/97.2

83.4/97.3

87.9/95.5

81.2/97.0

: IDMC-F2 ii

92.2/98.0

86.6/94.4

81.3/96.7

: IDC-F2-C i

92.0/97.5

86.2/91.1

89.4/97.2

83.5/97.3

87.8/94.9

81.3/96.7

: IDC-F2-C ii

92.2/98.0

90.2/96.4

86.6/94.4

81.3/96.7

: IDC-F2-M i

92.2/98.5

86.2/91.1

89.3/97.2

83.3/97.3

87.8/95.5

81.3/96.7

: IDC-F2-M ii

91.9/98.0

90.0/96.0

86.5/93.8

81.2/96.3

: COC i

92.3/98.5

86.0/91.1

89.4/97.2

82.7/96.3

87.9/94.9

80.9/95.9

: COC ii

92.2/97.5

90.0/96.0

86.5/94.4

81.3/96.7

: BSB

100.0/100.0

100.0/100.0

98.4/99.6

99.5/100.0

100.0/100.0

99.8/99.6

  1. Notes: Values before slashes (/) denote nucleotide identity, and values after slashes denote amino acid identity; P represents one or two amino acid sequences as pseudogene sequences for which the identity cannot be compared