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Table 1 Mean -log10p for non-eQTL and eQTL breast cancer OncoArray SNPs. The eQTLs are stratified by tissue types. Only gray zone SNPs (0.05 > p > 5 × 10− 8) were used in this analysis

From: SNP eQTL status and eQTL density in the adjacent region of the SNP are associated with its statistical significance in GWA studies

eQTL tissue typenon-eQTL SNPeQTL SNPaMW(Z)P
-log10pbN-log10pbN
Esophagus Mucosa2.01/1.831,044,6422.27/2.04155611.992.56E-32
Thyroid2.01/1.831,044,3392.24/2.01185911.554.40E-30
Nerve Tibial2.01/1.831,044,3342.22/2186410.641.02E-25
Pancreas2.01/1.831,045,1042.28/2.05109410.421.03E-24
Artery Aorta2.01/1.831,044,9052.25/2.02129310.342.45E-24
Skin Not Sun Exposed Suprapubic2.01/1.831,044,6702.23/2.01152810.161.56E-23
Lung2.01/1.831,044,6152.22/2158310.12.80E-23
Stomach2.01/1.831,045,2492.28/2.059499.758.90E-22
Adipose Subcutaneous2.01/1.831,044,5102.21/1.9916889.759.52E-22
Muscle Skeletal2.01/1.831,044,6832.22/215159.749.64E-22
Esophagus Muscularis2.01/1.831,044,6422.22/215569.64.00E-21
Testis2.01/1.831,044,3912.2/1.9818079.392.77E-20
Esophagus Gastroesophageal Junction2.01/1.831,045,1772.26/2.0310219.363.63E-20
Colon Sigmoid2.01/1.831,045,1572.25/2.0210419.354.16E-20
Skin Sun Exposed Lower leg2.01/1.831,044,3982.19/1.9718009.152.53E-19
Adipose Visceral Omentum2.01/1.831,044,9212.23/2.0112779.142.89E-19
Heart Left Ventricle2.01/1.831,045,1322.24/2.0110668.941.70E-18
Cells Transformed fibroblasts2.01/1.831,044,6392.2/1.9815598.882.98E-18
Artery Coronary2.01/1.831,045,5572.3/2.066418.787.49E-18
Artery Tibial2.01/1.831,044,5452.19/1.9716538.583.99E-17
Brain Cerebellum2.01/1.831,045,0022.21/1.9911968.382.29E-16
Breast Mammary Tissue2.01/1.831,045,1732.23/2.0110258.352.81E-16
Pituitary2.01/1.831,045,2662.23/2.019328.131.82E-15
Adrenal Gland2.01/1.831,045,2702.23/2.019287.995.29E-15
Heart Atrial Appendage2.01/1.831,045,0512.2/1.9811477.753.56E-14
Colon Transverse2.01/1.831,045,0712.21/1.9911277.753.71E-14
Cells EBV-transformed lymphocytes2.01/1.831,045,6172.28/2.055817.743.81E-14
Whole Blood2.01/1.831,045,0142.2/1.9811847.715.10E-14
Spleen2.01/1.831,045,2432.21/1.999557.291.17E-12
Liver2.01/1.831,045,5812.25/2.0261779.12E-12
Brain Hypothalamus2.01/1.831,045,6932.27/2.045056.91.79E-11
Prostate2.01/1.831,045,5712.23/2.016276.651.01E-10
Brain Cerebellar Hemisphere2.01/1.831,045,1742.19/1.9710246.641.08E-10
Brain Putamen basal ganglia2.01/1.831,045,5612.23/2.016376.61.36E-10
Brain Caudate basal ganglia2.01/1.831,045,3642.19/1.978346.241.44E-09
Brain Amygdala2.01/1.831,045,8052.27/2.043936.211.72E-09
Vagina2.01/1.831,045,8032.25/2.023955.73.61E-08
Brain Substantia nigra2.01/1.831,045,8942.28/2.053045.548.85E-08
Ovary2.01/1.831,045,6272.2/1.985715.421.66E-07
Brain Frontal Cortex BA92.01/1.831,045,4592.18/1.977395.372.13E-07
Minor Salivary Gland2.01/1.831,045,8362.25/2.023625.362.25E-07
Brain Anterior cingulate cortex BA242.01/1.831,045,5202.18/1.976785.215.21E-07
Brain Nucleus accumbens basal ganglia2.01/1.831,045,4082.17/1.967905.25.41E-07
Brain Spinal cord cervical c-12.01/1.831,045,7372.2/1.984614.774.66E-06
Small Intestine Terminal Ileum2.01/1.831,045,5032.16/1.956954.667.51E-06
Brain Cortex2.01/1.831,045,2532.13/1.939454.313.74E-05
Uterus2.01/1.831,045,7802.18/1.974184.099.19E-05
Brain Hippocampus2.01/1.831,045,6582.16/1.955404.041.12E-04
  1. aMW(Z) is a Z statistics from Mann-Whitney test for comparing two samples
  2. bmean/median