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Table 2 Mean -log10p for not eQTL and eQTL lung cancer OncoArray SNPs. The eQTLs are stratified by tissue types

From: SNP eQTL status and eQTL density in the adjacent region of the SNP are associated with its statistical significance in GWA studies

eQTL tissue typenon-eQTL SNPeQTL SNPaMW(Z)P
-log10pbN-log10pbN
Uterus1.88/1.69798,9952.26/2.012698.622.90E-17
Adipose Subcutaneous1.88/1.69798,2972.04/1.839677.985.90E-15
Vagina1.88/1.69798,9972.23/1.992677.957.60E-15
Spleen1.88/1.69798,6882.13/1.95767.929.90E-15
Prostate1.88/1.69798,8472.16/1.934177.782.80E-14
Ovary1.88/1.69798,9162.18/1.953487.724.40E-14
Cells EBV-transformed lymphocytes1.88/1.69798,8932.18/1.953717.695.90E-14
Pituitary1.88/1.69798,7332.12/1.895317.541.70E-13
Artery Coronary1.88/1.69798,8622.12/1.894027.541.80E-13
Small Intestine Terminal Ileum1.88/1.69798,8272.13/1.94377.414.60E-13
Adipose Visceral Omentum1.88/1.69798,5032.07/1.857617.348.00E-13
Brain Substantia nigra1.88/1.69799,0782.26/2.011867.281.20E-12
Whole Blood1.88/1.69798,5782.09/1.876867.153.20E-12
Brain Spinal cord cervical c-11.88/1.69798,9792.2/1.962857.094.90E-12
Stomach1.88/1.69798,7242.11/1.895407.065.80E-12
Breast Mammary Tissue1.88/1.69798,7032.1/1.885617.037.60E-12
Brain Putamen basal ganglia1.88/1.69798,8892.14/1.913756.999.50E-12
Brain Cerebellum1.88/1.69798,5242.05/1.837406.999.80E-12
Brain Nucleus accumbens basal ganglia1.88/1.69798,7662.12/1.894986.961.20E-11
Brain Cortex1.88/1.69798,7352.11/1.895296.91.80E-11
Esophagus Gastroesophageal Junction1.88/1.69798,6282.09/1.876366.833.00E-11
Artery Tibial1.88/1.69798,3252.02/1.819396.784.20E-11
Colon Transverse1.88/1.69798,5672.08/1.866976.716.70E-11
Pancreas1.88/1.69798,6282.09/1.876366.77.30E-11
Skin Not Sun Exposed Suprapubic1.88/1.69798,3722.05/1.838926.669.30E-11
Heart Atrial Appendage1.88/1.69798,5742.08/1.866906.61.30E-10
Adrenal Gland1.88/1.69798,7122.06/1.845526.591.50E-10
Brain Cerebellar Hemisphere1.88/1.69798,6072.04/1.836576.512.50E-10
Liver1.88/1.69798,8932.11/1.893716.473.20E-10
Brain Frontal Cortex BA91.88/1.69798,7882.1/1.884766.319.00E-10
Skin Sun Exposed Lower leg1.88/1.69798,2612.04/1.8310036.271.20E-09
Brain Hippocampus1.88/1.69798,9362.14/1.913286.123.00E-09
Heart Left Ventricle1.88/1.69798,6402.07/1.856246.083.70E-09
Thyroid1.88/1.69798,1302.02/1.8111345.929.60E-09
Lung1.88/1.69798,3542.02/1.819105.881.20E-08
Nerve Tibial1.88/1.69798,2172.02/1.8110475.851.50E-08
Esophagus Mucosa1.88/1.69798,3162.03/1.829485.851.50E-08
Minor Salivary Gland1.88/1.69799,0322.14/1.912325.841.60E-08
Artery Aorta1.88/1.69798,4982.01/1.87665.693.70E-08
Brain Caudate basal ganglia1.88/1.69798,7712.04/1.834935.539.10E-08
Colon Sigmoid1.88/1.69798,6582.05/1.836065.451.40E-07
Testis1.88/1.69798,1952.01/1.810695.441.50E-07
Brain Hypothalamus1.88/1.69798,9382.12/1.893265.41.80E-07
Muscle Skeletal1.88/1.69798,4092.02/1.818555.224.90E-07
Cells Transformed fibroblasts1.88/1.69798,3752.02/1.818895.061.10E-06
Brain Anterior cingulate cortex BA241.88/1.69798,8802.02/1.813843.911.90E-04
Brain Amygdala1.88/1.69799,0221.98/1.782422.442.00E-02
  1. aMW(Z) is a Z statistics from Mann-Whitney test for comparing two samples
  2. bmean/median