Table 3 Indels, SVs, and CNVs annotation in the six peach accessions
Annotation | Ka Shi Huang Rou Li Guang | Jin Mi Xia Ye Tao | Xin Jiang Pan Tao 2 | Xia Miao 1 | Sa Hua Hong Pan Tao | Wu Yue Xian Bian Gan | |
|---|---|---|---|---|---|---|---|
InDels | Insertion | 59,642 | 55,539 | 74,791 | 72,646 | 87,492 | 79,369 |
Deletion | 62,357 | 58,688 | 77,136 | 75,862 | 91,476 | 82,699 | |
Total | 121,999 | 114,227 | 151,927 | 148,508 | 178,968 | 162,068 | |
SVs | Insertion | 508 | 671 | 200 | 255 | 482 | 686 |
Deletion | 2765 | 2844 | 3199 | 3473 | 4469 | 3868 | |
Others | 5113 | 5585 | 8042 | 5982 | 7347 | 5409 | |
Total | 8386 | 9100 | 11,441 | 9710 | 12,298 | 9963 | |
CNVs | Duplication | 555 | 536 | 431 | 538 | 638 | 560 |
Deletion | 1771 | 1689 | 1707 | 1573 | 1943 | 1657 | |
Total | 2326 | 2225 | 2138 | 2111 | 2581 | 2217 | |