Characterization, identification and expression profiling of genome-wide R-genes in melon and their putative roles in bacterial fruit blotch resistance

Islam, Md. Rafiqul; Hossain, Mohammad Rashed; Jesse, Denison Michael Immanuel; Jung, Hee-Jeong; Kim, Hoy-Taek; Park, Jong-In; Nou, Ill-Sup

doi:10.1186/s12863-020-00885-9

Table 1 Information about R-genes throughout the melon genome including chromosomal positions, lengths, and annotated descriptions

From: Characterization, identification and expression profiling of genome-wide R-genes in melon and their putative roles in bacterial fruit blotch resistance

Sl.	Gene ID^a	Chr. Number	Position on chromosome		CDS-length (bp)	Peptide length (AA)	Strand	Description
Sl.	Gene ID^a	Chr. Number	Start	End	CDS-length (bp)	Peptide length (AA)	Strand	Description
1	MELO3C023580.2	chr01	33,386,823	33,390,698	687	288	–	Disease-resistance protein RGA2-like
2	MELO3C023579.2	chr01	33,395,126	33,397,789	2664	887	–	Disease-resistance protein RGA2-like isoform X1
3	MELO3C023578.2	chr01	33,410,087	33,414,749	1158	385	–	Disease-resistance protein
4	MELO3C023577.2	chr01	33,419,963	33,423,566	2715	904	–	Disease-resistance protein RGA2-like
5	MELO3C023441.2	chr01	34,457,351	34,462,055	2766	921	–	Receptor-kinase, putative
6	MELO3C023440.2	chr01	34,462,521	34,463,915	1338	445	–	LRR receptor-like serine/threonine-protein kinase GSO2
7	MELO3C023439.2	chr01	34,468,416	34,473,193	3207	1068	–	LRR receptor-like serine/threonine-protein kinase GSO2
8	MELO3C023438.2	chr01	34,474,924	34,475,353	336	111	+	LRR receptor-like serine/threonine-protein kinase GSO2
9	MELO3C023437.2	chr01	34,475,729	34,476,367	354	117	+	Receptor-kinase, putative
10	MELO3C029319.2	chr02	4,111,584	4,115,605	717	238	+	NBS-LRR type resistance protein
11	MELO3C015353.2	chr02	985,162	987,242	1737	578	+	Disease-resistance protein RGA2-like
12	MELO3C015354.2	chr02	990,582	993,823	3240	1080	+	Disease-resistance protein RGA2-like
13	MELO3C029505.2	chr02	7,359,371	7,363,388	765	254	–	TMV resistance protein N-like
14	MELO3C010346.2	chr02	17,481,683	17,485,283	1593	530	+	TMV resistance protein N
15	MELO3C010827.2	chr03	30,596,169	30,600,072	3663	1054	–	Receptor-kinase, putative
16	MELO3C010826.2	chr03	30,600,299	30,603,794	3054	1071	–	Receptor-kinase, putative
17	MELO3C010825.2	chr03	30,604,364	30,611,770	6069	2022	–	Receptor-kinase, putative
18	MELO3C009695.2	chr04	30,097,463	30,100,144	2682	893	+	Disease-resistance protein
19	MELO3C009694.2	chr04	30,103,601	30,106,071	2391	796	+	Disease-resistance protein
20	MELO3C009693.2	chr04	30,110,724	30,113,156	2358	786	+	Disease-resistance protein
21	MELO3C009179.2	chr04	33,763,652	33,766,776	3042	1013	+	Receptor-kinase, putative
22	MELO3C009177.2	chr04	33,766,795	33,780,875	3231	1076	+	Receptor-kinase, putative
23	MELO3C004259.2	chr05	25,752,437	25,757,292	3951	1316	+	TMV resistance protein N-like isoform X1
24	MELO3C004288.2	chr05	26,044,574	26,052,361	3171	1056	+	TMV resistance protein N-like
25	MELO3C004289.2	chr05	26,065,157	26,071,880	3867	1288	–	TMV resistance protein N-like
26	MELO3C004301.2	chr05	26,231,021	26,237,770	4032	1343	–	TMV resistance protein N-like isoform X1
27	MELO3C004303.2	chr05	26,239,395	26,244,020	2052	683	–	TMV resistance protein N-like
28	MELO3C004309.2	chr05	26,263,738	26,270,641	4134	1377	+	TMV resistance protein N-like
29	MELO3C004311.2	chr05	26,280,801	26,299,171	3156	1051	–	TMV resistance protein N-like
30	MELO3C004313.2	chr05	26,311,869	26,315,091	2115	704	–	TMV resistance protein N-like
31	MELO3C006780.2	chr06	5,898,974	5,902,420	3447	1148	–	Disease-resistance protein
32	MELO3C006801.2	chr06	6,106,483	6,109,133	846	281	–	Protein enhanced disease resistance 2-like
33	MELO3C016529.2	chr06	27,910,808	27,913,125	504	167	–	TMV resistance protein N
34	MELO3C013803.2	chr06	33,588,343	33,599,894	2184	727	+	Protein enhanced disease resistance 2
35	MELO3C017700.2	chr07	26,469,746	26,473,637	3141	1046	–	Disease-resistance protein RGA2-like
36	MELO3C017701.2	chr07	26,475,401	26,480,759	3192	1063	+	Disease-resistance protein RGA2-like
37	MELO3C017703.2	chr07	26,480,404	26,483,226	2823	940	–	Disease-resistance protein RGA2-like
38	MELO3C007354.2	chr08	2,332,143	2,335,108	1806	601	–	Cysteine-rich receptor-like protein kinase 29
39	MELO3C007358.2	chr08	2,346,707	2,353,661	4296	1431	–	Receptor-like protein kinase
40	MELO3C007360.2	chr08	23,53,788	2,361,267	4088	1395	–	Receptor-like protein kinase
41	MELO3C007367.2	chr08	2,372,510	2,386,472	4656	1551	–	Receptor-like kinase
42	MELO3C022157.2	chr09	665,753	668,864	2025	674	–	TMV resistance protein N-like isoform X1
43	MELO3C022154.2	chr09	681,564	689,908	3432	1143	–	TMV resistance protein N-like
44	MELO3C022152.2	chr09	700,743	713,705	4173	1390	+	TMV resistance protein N-like
45	MELO3C022146.2	chr09	762,107	767,613	2274	757	–	TMV resistance protein N-like
46	MELO3C022145.2	chr09	768,255	784,265	3807	1268	+	TMV resistance protein N-like
47	MELO3C022144.2	chr09	784,629	792,999	4902	1633	–	TMV resistance protein N-like
48	MELO3C025516.2	chr09	6,632,514	6,659,697	4371	1,456	–	TMV resistance protein N-like
49	MELO3C025519.2	chr09	6,674,960	6,677,738	762	253	–	Disease-resistance protein RGA2-like
50	MELO3C025518.2	chr09	6,675,092	6,676,395	648	215	–	Disease-resistance protein RGA2-like
51	MELO3C005450.2	chr09	21,691,401	21,694,271	2790	929	–	LRR receptor-like kinase family protein
52	MELO3C005451.2	chr09	21,699,468	21,702,467	3000	999	–	LRR receptor-like kinase
53	MELO3C005452.2	chr09	21,708,265	21,711,353	28,17	938	–	LRR receptor-like kinase
54	MELO3C012268.2	chr10	1,574,521	1,579,615	1800	599	+	Leaf rust 10 disease-resistance locus receptor-like protein kinase-like 1.2 isoform X4
55	MELO3C012049.2	chr10	2,989,020	2,990,934	1869	622	+	Leaf rust 10 disease-resistance locus receptor-like protein kinase-like 1.5
56	MELO3C012045.2	chr10	3,007,893	3,014,091	1503	500	–	Protein enhanced disease resistance 2
57	MELO3C034399.2	chr10	15,627,727	15,627,921	195	64	+	Disease-resistance protein At4g27190-like
58	MELO3C022580.2	chr10	16,222,411	16,222,859	447	148	–	Disease-resistance protein RGA2-like
59	MELO3C022447.2	chr11	33,758,671	33,762,610	3030	1009	–	Receptor-like protein
60	MELO3C022449.2	chr11	33,770,307	33,772,966	2145	714	–	Receptor-like protein
61	MELO3C002671.2	chr12	22,199,381	22,201,102	1350	449	+	LRR receptor-like kinase
62	MELO3C002667.2	chr12	22,209,961	22,215,123	3279	1092	+	LRR receptor-like kinase
63	MELO3C002666.2	chr12	22,219,699	22,226,478	3114	1037	+	LRR receptor-like kinase
64	MELO3C002506.2	chr12	23,598,469	23,607,646	2040	679	–	Receptor-like protein kinase
65	MELO3C002504.2	chr12	23,611,543	23,620,880	3870	1289	–	Cysteine-rich receptor-like protein kinase 28
66	MELO3C002501.2	chr12	23,633,920	23,636,908	1617	538	+	Cysteine-rich receptor-like protein kinase 26 isoform X1
67	MELO3C002394.2	chr12	24,343,418	4,346,595	2385	794	–	LRR receptor-like kinase family protein
68	MELO3C002393.2	chr12	24,352,898	4,355,087	2190	729	–	LRR receptor-like kinase
69	MELO3C002392.2	chr12	24,358,807	24,361,890	3084	1027	–	LRR receptor-like serine/threonine-protein kinase GSO1
70	MELO3C002389.2	chr12	24,376,328	24,380,811	3786	1261	+	LRR receptor-like serine/threonine-protein kinase GSO1

^aGenomic information based on the reference Genome of Melon (DHL92) v3.6.1 retrieved from the Cucurbit Genomics Database (http://cucurbitgenomics.org)

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