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Table 2 R-genes throughout the melon genome categorized based on functional disease resistance-related domains

From: Characterization, identification and expression profiling of genome-wide R-genes in melon and their putative roles in bacterial fruit blotch resistance

Sl.

Domain

Function

Gene ID

1

Leucine-rich repeat (LRR)

Recognition of pathogen and Plant Defense [29, 46]

MELO3C023577.2, MELO3C023579.2, MELO3C015353.2, MELO3C015354.2, MELO3C017700.2, MELO3C017701.2, MELO3C025518.2, MELO3C009695.2, MELO3C006780.2, MELO3C023441.2, MELO3C023437.2, MELO3C023440.2, MELO3C023439.2, MELO3C023438.2, MELO3C004303.2, MELO3C025516.2, MELO3C010346.2, MELO3C005450.2, MELO3C002394.2, MELO3C005451.2, MELO3C005452.2, MELO3C002671.2, MELO3C002667.2, MELO3C022447.2, MELO3C022449.2, MELO3C002392.2, MELO3C002389.2, MELO3C002393.2, MELO3C029505.2, MELO3C034399.2, MELO3C010827.2, MELO3C010826.2, MELO3C010825.2, MELO3C009179.2, MELO3C009177.2, MELO3C007367.2, MELO3C002666.2

2

Nucleotide-binding site leucine-rich repeat (NBS-LRR)

Resistance protein Signaling and Plant Defense [27, 33, 47]

MELO3C029319.2

3

Toll/interleukin-1 receptor homology (TIR)

TMV resistance protein N [34, 46]

MELO3C022157.2, MELO3C016529.2

4

Toll/interleukin-1 receptor homology nucleotide-binding site leucine-rich repeat (TIR-NBS-LRR)

Pathogen specificity and defense [34, 46, 48] {Nandety, 2013 #111}

MELO3C004288.2, MELO3C004289.2, MELO3C004311.2, MELO3C004313.2, MELO3C022154.2, MELO3C022152.2, MELO3C022146.2, MELO3C022145.2, MELO3C022144.2, MELO3C004309.2, MELO3C004259.2, MELO3C004301.2,

5

Nucleotide-binding adaptor shared by APAF-1, R proteins and CED-4 (NB-ARC)

Molecular switch in activating defenses [28, 31]

MELO3C017703.2, MELO3C025519.2, MELO3C022580.2, MELO3C023578.2, MELO3C009694.2, MELO3C009693.2, MELO3C013803.2

6

Coiled-coil domain (CC)

Pathogen recognition and signaling [31, 32, 49]

MELO3C023580.2

7

Protein kinase (RLK)

Signaling and plant defense [35, 50,51,52]

MELO3C007354.2, MELO3C007358.2, MELO3C007360.2, MELO3C002506.2, MELO3C012268.2, MELO3C012049.2, MELO3C002504.2, MELO3C002501.2

8

Domain of unknown function (DUF)

Protein enhanced disease resistance 2-like [53, 54]

MELO3C006801.2, MELO3C012045.2