Mining of favorable alleles for seed reserve utilization efficiency in Oryza sativa by means of association mapping

Table 5 Favorable alleles, their effects and typical carriers for SRUE of the 13 loci detected across 506 rice accessions in 2016 and 2017 (listed in descending order of phenotypic effect values)

Marker-allele(bp)	Phenotypic effect value (mg.mg⁻¹)			Typical carrier
Marker-allele(bp)	2016	2017	Mean	Typical carrier
RM297–180	0.449	0.450	0.450	Manyedao
RM297–175	0.437	0.444	0.441	Daniaodao
RM184–225	0.432	0.430	0.431	Yandao6
RM184–215	0.413	0.418	0.416	Daniaodao
RM184–205	0.376	0.383	0.379	Manyedao
RM297–205	0.319	0.337	0.328	Youzhiyueguang
RM184–270	0.299	0.316	0.307	Youzhiyueguang
RM281–140	0.153	0.147	0.150	Yandao6
RM434–150	0.148	0.142	0.145	Yue40
RM5746–195	0.139	0.132	0.136	Yandao6
RM3589–210	0.141	0.131	0.136	Yue77
RM3471–110	0.1367	0.1297	0.1332	Yue40
RM5818–145	0.1365	0.1245	0.1305	Yue40
RM525–100	0.1338	0.1239	0.1289	Yue7
RM434–155	0.1311	0.126	0.1284	Yue77
RM5746–170	0.130	0.124	0.1270	Manyedao
RM3589–85	0.124	0.115	0.119	Yandao6
RM525–110	0.122	0.113	0.118	Jiaobaiyeqing
RM309–160	0.119	0.111	0.115	Yue77
RM3589–220	0.117	0.111	0.114	Yue40
RM3471–170	0.1154	0.110	0.113	Eyingbaijingdao
RM232–115	0.116	0.108	0.112	Yue77
RM7309–135	0.106	0.096	0.101	Manyedao

Locus-allele in bold font are identified by both GLM and MLM in this study and the rest by GLM only

ISSN: 2730-6844