SNP marker | GGAa | Positionb | Nearest genec | consequence typed | SNPd | Traitse | Chicken populationsf | Reference |
---|---|---|---|---|---|---|---|---|
rs13687128 | 1 | 92,866,047 | POU1F1 | synonymous variant | T/C | BW at 21, 35 days and SD at 63 days (P < 0.05), BW at 28 days and ADG from 0 to 4 weeks of age (P < 0.01) | F2 resource population made up of reciprocal cross between White Recessive Rock and Xinghua chickens | [25] |
rs317360945 | 7 | 23,386,524 | IGFBP2 | synonymous variant | C/T | BW at 7, 14, 21, 28, 35, 42, 49, 56, 90 days, and CW, EW, BMW at 90 days (P < 0.01), LMW at 90 days (P < 0.05) | F2 resource population made up of reciprocal cross between White Recessive Rock and Xinghua chickens | [23] |
rs14734533 | 4 | 70,143,452 | TBC1D1 | 3 prime UTR variant | G/A | BW, CW, EW, SEW and LMW at 90 days (P < 0.05) | Erlang Mountainous chickens | [28] |
rs314127605 | 5 | 15,760,767 | ATGL | missense variant | C/T | BW at 14, 21, 35, 63, 70, 77 days, CFW and AFW (P < 0.05), BW at 42, 49, and 56 days (P < 0.01) | F2 resource population made up of reciprocal cross between White Recessive Rock and Chinese Xinghua chickens | [26] |
NC_006092.4: g.25657391 T > A | 5 | 25,657,391 | CAPN3 | intron variant | T/A | BW, EP, BMP at 90 days (P < 0.05) | five commercial pure lines (S01, S02, S03, S05, and D99) and 4 Chinese native breeds (Huiyang Huxu chicken, Qingyuan Ma chicken, Caoke chicken and Mountainous black-bone chicken) | [33] |
NT_464126.1: g. 66916G > A | 30 | 66,916 | SLC27A1 | missense variant | G/A | LW, CW, SEW, EW and BMWP at 91 days (P < 0.05) | eight meat-type quality chicken populations including S01, S02, S03, S05, S06, D99, S05 × S01, and S06 × S01 of Dahen chicken | [29] |
rs314901473 | 1 | 14,235,966 | PBEF1 | synonymous variant | G/A | BW at 4, 6 weeks, and SL, BWLR and BFD at 4 weeks (P < 0.05), and BBL at 4 weeks (P < 0.01) | F2 resource population made up of reciprocal cross between Gushi chicken and Anka broilers | [22] |
rs316142388 | 1 | 169,208,798 | SETDB2 | intron variant | T/C | BW at 12, 14, 16 weeks (P < 0.05) | Jinghai yellow chickens | [17] |
rs314403820 | 3 | 67,466,233 | FOXO3 | intron variant | G/A | CW, SEW, EW and BMW at 49 days (P < 0.05) | White Recessive Rock and Xinghua chickens | [18] |
rs14202565 | 2 | 69,322,385 | MC4R | missense variant | G/C | BW, CW, SHL at 7 weeks (P < 0.05) | F6 generation of Arbor Acres grandsire line | [24] |
rs16438236 | 4 | 77,857,657 | 87 kb U BOD1Lg | intergenic variant | C/T | BW at 10, 11, 12 weeks and ADG from 6 weeks to 12 weeks of age (P < 0.01) | F2 resource population made up of reciprocal crosses of Silky Fowl and White Plymouth Rock | [31] |
rs13939265 | 1 | 130,801,788 | OCA2 | intron variant | C/T | BW at 11 weeks and 12 weeks (P < 0.01) | F2 resource population made up of reciprocal crosses of Silky Fowl and White Plymouth Rock | [31] |
rs15620544 | 4 | 77,233,676 | FBXL5 | intron variant | C/T | BW at 10 weeks (P < 0.01) | F2 resource population made up of reciprocal crosses of Silky Fowl and White Plymouth Rock | [31] |
rs16434462 | 4 | 73,027,691 | —h | intergenic variant | T/C | BW at 11, 12 weeks and ADG from 6 weeks to 12 weeks of age (P < 0.01) | F2 resource population made up of reciprocal crosses of Silky Fowl and White Plymouth Rock | [31] |