From: Estimating linkage disequilibrium from genotypes under Hardy-Weinberg equilibrium
Loci pair | Real count | MIDAS | CubeX 1st solution | CubeX 2nd solution | CML | Possible alternative solution? | CML alternative solution | LRT | CML Decision | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1–2 | 14 | 116 | 14 | 116 | 14 | 116 | NA | 14 | 116 | No | NA | NA | NA | ||
0 | 30 | 0 | 30 | 0 | 30 | 0 | 30 | ||||||||
1–3 | 69 | 61 | 64 | 66 | 64 | 66 | NA | 64 | 66 | No | NA | NA | NA | ||
17 | 13 | 22 | 8 | 22 | 8 | 22 | 8 | ||||||||
1–5 | 120 | 10 | 121 | 9 | 121 | 9 | 120 | 10 | 121 | 9 | Yes | 120 | 10 | 0.15 | Accept alternative |
30 | 0 | 29 | 1 | 29 | 1 | 30 | 0 | 29 | 1 | 30 | 0 | ||||
1–9 | 9 | 121 | 9 | 121 | 9 | 121 | 12 | 118 | 9 | 121 | Yes | 12 | 118 | 1.84 | Accept alternative |
3 | 27 | 3 | 27 | 3 | 27 | 0 | 30 | 3 | 27 | 0 | 30 | ||||
4–8 | 98 | 3 | 99 | 2 | 99 | 2 | 98 | 3 | 99 | 2 | Yes | 98 | 3 | 0.06 | Accept alternative |
59 | 0 | 58 | 1 | 58 | 1 | 59 | 0 | 58 | 1 | 59 | 0 | ||||
5–7 | 141 | 9 | 141 | 9 | 141 | 9 | 131 | 19 | 141 | 9 | Yes | 131 | 19 | 45.91 | Reject alternative |
0 | 10 | 0 | 10 | 0 | 10 | 10 | 0 | 0 | 10 | 10 | 0 | ||||
5–9 | 12 | 138 | 11 | 139 | 11 | 139 | 12 | 138 | 11 | 139 | Yes | 12 | 138 | 1.37 | Accept alternative |
0 | 10 | 1 | 9 | 1 | 9 | 0 | 10 | 1 | 9 | 0 | 10 |