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Fig. 2 | BMC Genetics

Fig. 2

From: On rare variants in principal component analysis of population stratification

Fig. 2

Scatter plots and representative points with SNPs from six MAF bins, PC 1 vs. PC 3. (a) 0.4 < MAF ≤ 0.5 (b) 0.3 < MAF ≤ 0.4 (c) 0.2 < MAF ≤ 0.3 (d) 0.1 < MAF ≤ 0.2 (e) 0.01 < MAF ≤ 0.1 (f) 0.0001 < MAF ≤ 0.01. EUR: European, EAS: East Asian, AMR: American, SAS: South Asian, AFR: African. The first values in brackets are the percentages of variance explained from the PCAs of GRMs; and the second values are from the PCAs of EGRMs. Large symbols in black are the representative points of the five populations

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