Fig. 3From: Genetic and genomic characterization of vulva size traits in Yorkshire and Landrace giltsGenomic prediction accuracies (GPA) based on different sets of SNPs based on the GWAS results. Results for Landrace and Yorkshire breeds are in a and b, respectively, for vulva area (VA), vulva height (VH), and vulva width (VW). Within each panel, color bars represent GPA across SNP datasets. a For Landrace, Sus scrofa chromosome (SSC) 2, SSC 7, SSC 8, and SSC 10 represent the SNP datasets based on QTL identified on SSC 2 (154–157 Mb), 7 (107–110 Mb), 8 (4–6 Mb), and 10 (8–19 Mb), respectively. b For Yorkshire, SSC 1a, SSC 1b, and SSC 5 represent the SNP datasets based on QTLs on SSC 1 (87–91 Mb), SSC 1 (282–287 Mb), and SSC 5 (67 Mb), respectively. ALL represents all markers used for analysis (as presented in Fig. 1), QTL represents the SNP dataset based on all QTL identified for a given trait per breed, and REST represents the SNP dataset based on ALL minus the SNPs outside the QTL and neighboring upstream and downstream 3-Mb regions. Error bars represent the standard deviation of accuracies across cross-validation foldsBack to article page