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Fig. 3 | BMC Genetics

Fig. 3

From: Genetic and genomic characterization of vulva size traits in Yorkshire and Landrace gilts

Fig. 3

Genomic prediction accuracies (GPA) based on different sets of SNPs based on the GWAS results. Results for Landrace and Yorkshire breeds are in a and b, respectively, for vulva area (VA), vulva height (VH), and vulva width (VW). Within each panel, color bars represent GPA across SNP datasets. a For Landrace, Sus scrofa chromosome (SSC) 2, SSC 7, SSC 8, and SSC 10 represent the SNP datasets based on QTL identified on SSC 2 (154–157 Mb), 7 (107–110 Mb), 8 (4–6 Mb), and 10 (8–19 Mb), respectively. b For Yorkshire, SSC 1a, SSC 1b, and SSC 5 represent the SNP datasets based on QTLs on SSC 1 (87–91 Mb), SSC 1 (282–287 Mb), and SSC 5 (67 Mb), respectively. ALL represents all markers used for analysis (as presented in Fig. 1), QTL represents the SNP dataset based on all QTL identified for a given trait per breed, and REST represents the SNP dataset based on ALL minus the SNPs outside the QTL and neighboring upstream and downstream 3-Mb regions. Error bars represent the standard deviation of accuracies across cross-validation folds

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