From: Association between SNPs within candidate genes and compounds related to boar taint and reproduction
SNP ID | Alleles | MAF | Homozygote 1 | Heterorozygote | Homozygote 2 |
---|---|---|---|---|---|
AK1_483(ex5) | (C) T | 0.263 | C/C (n = 109) | C/T (n = 677) | T/T (n = 914) |
AKR1C3_in4b | C (T) | 0.37 | C/C (n = 1349) | C/T (n = 285) | T/T (n = 20) |
AKR1C3_in4c | C (T) | 0.095 | C/C (n = 1324) | C/T (n = 268) | T/T (n = 19) |
ALB_1103(ex9) | (C) T | 0.093 | C/C (n = 10) | C/T (n = 293) | T/T (n = 1374) |
Bap1_3'UTRa | (A) T | 0.415 | A/A (n = 266) | A/T (n = 851) | T/T (n = 548) |
Bap1_3'UTRb | (A) G | 0.336 | A/A (n = 171) | A/G (n = 751) | G/G (n = 705) |
CRSP9_504(ex1) | (A) G | 0.106 | A/A (n = 17) | A/G (n = 320) | G/G (n = 1333) |
CTNND1_3'UTRb | A (G) | 0.449 | A/A (n = 512) | A/G (n = 816) | G/G (n = 342) |
CYB5_-8(prom) | G (T) | 0.027 | G/G (n = 1611) | G/T (n = 92) | - |
CYP11B1_in1c | C (T) | 0.492 | C/C (n = 435) | C/T (n = 783) | T/T (n = 409) |
CYP11B1_in1a | (C) G | 0.49 | C/C (n = 398) | C/G (n = 842) | G/G (n = 432) |
CYP21_in6a | C (G) | 0.241 | C/C (n = 946) | C/G (n = 643) | G/G (n = 81) |
CYP21_in9 | A (G) | 0.231 | A/A (n = 986) | A/G (n = 608) | G/G (n = 83) |
CYP21_in8b | (A) G | 0.183 | A/A (n = 50) | A/G (n = 518) | G/G (n = 1124) |
CYP2C49_1251(ex8) | (A) C | 0.488 | - | A/C (n = 1560) | C/C (n = 39) |
CYP2D6_1276(ex7) | C (T) | 0.222 | C/C (n = 1003) | C/T (n = 604) | T/T (n = 71) |
CYP2D6_1287(ex7) | (A) G | 0.197 | A/A (n = 21) | A/G (n = 594) | G/G (n = 1002) |
CYP2E1_1422(ex9) | (C) T | 0.417 | C/C (n = 286) | C/T (n = 829) | T/T (n = 565) |
CYP2E1_1423(ex9) | (A) G | 0.183 | A/A (n = 55) | A/G (n = 493) | G/G (n = 1103) |
CYP2E1_in1a | C (G) | 0.416 | C/C (n = 562) | C/G (n = 798) | G/G (n = 285) |
CYP2E1_in1b | C (DEL) | 0.189 | C/C (n = 1086) | C/D (n = 519) | D/D (n = 55) |
CYP2E1_in6 | C (T) | 0.186 | C/C (n = 1064) | C/T (n = 497) | T/T (n = 52) |
CYP3A4_3'UTR | (C) T | 0.335 | C/C (n = 168) | C/T (n = 804) | T/T (n = 728) |
CYP3A4_1498(ex13) | (A) G | 0.331 | A/A (n = 163) | A/G (n = 786) | G/G (n = 729) |
DHRS6_3'UTR | (C) T | 0.333 | C/C (n = 192) | C/T (n = 720) | T/T (n = 748) |
EGFR_3'UTRa | C (T) | 0.447 | C/C (n = 482) | C/T (n = 795) | T/T (n = 313) |
EGFR_3'UTRb | C (T) | 0.439 | C/C (n = 493) | C/T (n = 817) | T/T (n = 296) |
EGFR_3'UTRc | A (C) | 0.131 | A/A (n = 1262) | A/G (n = 390) | G/G (n = 24) |
EGFR_in12 | C (T) | 0.449 | C/C (n = 503) | C/T (n = 858) | T/T (n = 332) |
EGFR_in2a | (C) T | 0.132 | C/C (n = 26) | C/T (n = 384) | T/T (n = 1236) |
EGFR_in2b | (C) T | 0.417 | C/C (n = 298) | C/T (n = 809) | T/T (n = 578) |
HBLD2_3'UTRa | G (T) | 0.488 | G/G (n = 409) | G/T (n = 783) | T/T (n = 371) |
HSD11B1_793(ex6) | (C) T | 0.306 | C/C (n = 155) | C/T (n = 710) | T/T (n = 804) |
HSD17B1_3'UTRb | (G) T | 0.101 | G/G (n = 20) | G/T (n = 293) | T/T (n = 1335) |
HSD17B1_3'UTRa | (A) C | 0.13 | A/A (n = 19) | A/C (n = 397) | C/C (n = 1256) |
HSD17B7_622(ex6) | A (G) | 0.276 | A/A (n = 854) | A/G (n = 593) | G/G (n = 141) |
HSPCA_3'UTR | C (T) | 0.429 | C/C (n = 527) | C/T (n = 811) | T/T (n = 294) |
HSPCA_2175(ex9) | A (G) | 0.433 | A/A (n = 538) | A/G (n = 833) | G/G (n = 311) |
HYAL1_748(ex1) | (G) T | 0.488 | G/G (n = 429) | G/T (n = 872) | T/T (n = 390) |
HYAL1_75(ex1) | (C) T | 0.489 | C/C (n = 390) | C/T (n = 863) | T/T (n = 427) |
HYAL2_583(ex1) | (A) C | 0.486 | A/A (n = 380) | A/C (n = 819) | C/C (n = 424) |
HYAL2_in1b | A (G) | 0.488 | A/A (n = 428) | A/G (n = 874) | G/G (n = 389) |
IQGAP2_3'UTR | A (G) | 0.27 | A/A (n = 837) | A/G (n = 640) | G/G (n = 109) |
MIS_in1 | C (T) | 0.13 | C/C (n = 1288) | C/T (n = 383) | T/T (n = 30) |
MMP1_in3a | C (T) | 0.253 | C/C (n = 927) | C/T (n = 633) | T/T (n = 104) |
MMP13_in2 | (A) C | 0.269 | A/A (n = 113) | A/C (n = 667) | C/C (n = 881) |
NGFIB_in3 | C (T) | 0.052 | C/C (n = 1509) | C/T (n = 167) | T/T (n = 3) |
PAPSS2_3'UTRa | A (G) | 0.269 | A/A (n = 861) | A/G (n = 620) | G/G (n = 121) |
PIAS1_1863(ex14) | A (G) | 0.266 | A/A (n = 885) | A/G (n = 679) | G/G (n = 104) |
PPP1R1A_291(ex5) | (A) G | 0.103 | A/A (n = 16) | A/G (n = 314) | G/G (n = 1343) |
RALBP1_3'UTR | C (T) | 0.025 | C/C (n = 1585) | C/T (n = 81) | T/T (n = 2) |
RNF14_3'UTR | (C) G | 0.433 | C/C (n = 297) | C/G (n = 843) | G/G (n = 520) |
SARG_3'UTR | A (G) | 0.192 | A/A (n = 1113) | A/G (n = 508) | G/G (n = 71) |
SOX9_in2c | C (G) | 0.406 | C/C (n = 588) | C/G (n = 750) | G/G (n = 284) |
SRD5A2_3'UTRd | C (T) | 0.478 | C/C (n = 449) | C/T (n = 826) | T/T (n = 377) |
SRD5A2_3'UTRa | G (T) | 0.176 | G/G (n = 1122) | G/T (n = 506) | T/T (n = 41) |
STARD3_3'UTR | C (T) | 0.133 | C/C (n = 1279) | C/T (n = 384) | T/T (n = 33) |
TSPYL4_3'UTR | C (G) | 0.408 | C/C (n = 588) | C/G (n = 830) | G/G (n = 275) |
UGT1A1_325(ex1) | (C) T | 0.105 | C/C (n = 19) | C/T (n = 301) | T/T (n = 1296) |
UGT1A10_3'UTR | (A) G | 0.115 | A/A (n = 66) | A/G (n = 241) | G/G (n = 1310) |
URB_2730(ex7) | A (G) | 0.166 | A/A (n = 1139) | A/G (n = 464) | G/G (n = 40) |