From: MCP1 haplotypes associated with protection from pulmonary tuberculosis
MCP1 | variant | rs # | Primer oligonucleotides | Sensor/Anchor oligonucleotides |
---|---|---|---|---|
-97569 | C/G | rs9891330 | F-TCTGATGCAGACAGCGAG | S-GCCTCCCCCACCCCCA |
R-CACCTGGAGTCCCAGTT | A-ATAGCTGTCGGGAGAGTCTGTATTTGAAAGAGAA | |||
-38600 | C/T | rs8075337 | F-CTTCTGTGAGCATTGGGT | S-ACTTCTTTTGCTGTGTTTTATTTTATTTTC |
R-AGAAACAAAAATTAGGGCATCTAC | A-CCAACATCTGGATTTCTTCAGGGACAGTTTACATT | |||
-1727 | A/T | rs3917886 | F-TGGGATTCTCCAGGAAACC | S-GAAGAAGAGATACTGGAATGGAAACATCC |
R-ACCCAGCTTTCGTTAGG | A-GGGTGGGAGTCTCAGCACATCTACTATTCTGTC | |||
Int1:96 | C/G | rs41507946 | F-TAAGGCCCCCTCTTCTTC | S-CCCACAGTCTTGCTTTAACGCTAC |
R-CTGTGTGGTTGGGCTCA | A-TTTCCAAGATAAGGTGACTCAGAAAAGGACAAGGG | |||
Int1:554-567 | W/D | rs3917887 | F-TCCCCAGCTGATCTTCC | S-TTTAACCGCTCCTCCTTC |
R-TGACTCAGTTTCCTATGCTGTA | A-GTCCGTCTTAATGACACTTGTAGGCATTATCTAG | |||
+1542 | C/T | rs13900 | F-GACCACCTGGACAAGCA | S-TAGCTTTCCCCAGACACCCTGTTTTA |
R-ATTACTTAAGGCATAATGTTTCACATC | A-CACAACCCAAGAATCTGCAGCTAACTTATTTTCCC | |||
+2413 | G/T | rs3917890 | F-ATGAGACCTGAACTTATTATTTA | S-GATCATTAAGAAAGGAGAAGGAAGAGTGG |
R-TTCACCCTAACATTCAAATC | A-AGCAAATACCTGGAGGTAGAAATGGTGATGATGTGTAC | |||
+2580 | A/T | rs41343046 | F-GCCCACACCAATGTCAA | S-AAGGGATTTGAATGTTAGGGTGAAAAGATA |
R-CTGAATCTCTAAACATGGCAC | A-ACTCAACTCTGTAGGTTAAAAGGAAACGTTGAGAA |