No | Features | Symbol | Reference |
---|---|---|---|
1 | 5' splice site strength (Shapiro score) | SH5'ss | [31] |
2 | 3' splice site strength (Shapiro score) | SH3'ss | [31] |
3 | 5' spice site strength (maximum entropy) | ME5'ss | [32] |
4 | 3' spice site strength (maximum entropy) | ME3'ss | [32] |
5 | 5' splice site strength (information content/Ri) | Ri5'ss | [33] |
6 | 3' splice site strength (information content/Ri) | Ri3'ss | [33] |
7 | U1 SnRNA binding free energy | FE | [35] |
8 | ESE density (RESCUE ESE/RESE) | RESE-D | [36] |
9 | ESE density (PESE) | PESE-D | [38] |
10 | ESS density (FAS-ESS/FESS) | FESS-D | [37] |
11 | ESS density (PESS) | PESS-D | [38] |
12 | SF2/ASF number | SF2/ASF-N | [39] |
13 | SF2/ASF (IgM/BRCA1) number | SF2/ASF (IgM, BRCA1)-N | [39] |
14 | SRp40 number | SRp40-N | [39] |
15 | SC35 number | SC35-N | [39] |
16 | SRp55 number | SRp55-N | [39] |
17 | SF2/ASF score density | SF2/ASF-D | [39] |
18 | SF2/ASF (IgM/BRCA1) score density | SF2/ASF (IgM-BRCA1)-D | [39] |
19 | SC35 score density | SC35-D | [39] |
20 | SRp40 score density | SRp40-D | [39] |
21 | SRp55 score density | SRp55-D | [39] |
22 | 5' splice site pre-mRNA secondary structure free energy | RSS5'ss | [40] |
23 | 3' splice site pre-mRNA secondary structure free energy | RSS3'ss | [40] |
24 | 5' splice site GC content | GC5'ss | [40] |
25 | 3' splice site GC content | GC3'ss | [40] |
26 | The number of nucleotides in exon | SIZE | Â |