Table 4 The top ten positional candidate genes located in the wood density QTL interval on linkage group 9 of the F 1 hybrid parent in the E. urophylla backcross family (52.2 cM, 28,269,541 bp to 70.9 cM, 37,191,970 bp, E. grandis genome assembly V1.0, http://www.phytozome.net/ )
Gene identification | Physical position (bp) | At. identification | At. description | eQTL on linkage group | eQTL position (cM) | Correlation with wood density (R2) |
|---|---|---|---|---|---|---|
Eucgr.I01988.1 | 29,648,986 | AT5G15410.1 | Cyclic nucleotide-regulated ion channel family protein | 4, 6, 10 | 12, 101, 51 | 0.53 |
Eucgr.I02335.1 | 33,854,742 | AT2G17820.1 | Histidine kinase 1 | 4, 9, 10 | 27, 52, 74 | 0.52 |
Eucgr.I02215.1 | 32,019,312 | AT5G65980.1 | Auxin efflux carrier family protein | 2, 9 | 74, 71 | 0.51 |
Eucgr.I02312.1 | 33,682,442 | AT1G68490.1 | Unknown | 9, 10 | 58, 74 | 0.48 |
Eucgr.I02402.1 | 34,626,812 | AT3G50930.1 | Cytochrome BC1 synthesis | 4, 10 | 20, 79 | 0.48 |
Eucgr.I02479.1 | 35,623,844 | AT2G46600.1 | Calcium-binding EF-hand family protein | 10 | 48 | 0.47 |
Eucgr.I02498.1 | 35,941,078 | AT1G23780.1 | F-box family protein | 9 | 52 | 0.43 |
Eucgr.I02108.1 | 30,728,548 | AT3G19660.1 | Unknown | 10 | 51 | 0.42 |
Eucgr.I02337.1 | 33,876,173 | AT5G66180.1 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | 9 | 67 | 0.41 |
Eucgr.I01935.1 | 29,248,252 | AT5G39865.1 | Glutaredoxin family protein | 4, 10 | 33, 77 | 0.41 |