Primer name | Gene | Sequenced rare allele | GenBank Acc No. | L | Sequence producing the most significant alignment | E-value | Name of conserved domain present | Domain ID | E-value |
---|---|---|---|---|---|---|---|---|---|
BDTG2 | Xa1 | Raghusail | HR575926 | 301 | Oryza sativa Japonica Group cDNA | 2e-135 | BED zinc finger | cl02703 | 2.74e-16 |
BDTG10 | Xa1 | Raghusail | HR575924 | 893 | Oryza sativa indica mRNA for XA1 | 3e-124 | - | - | - |
IC524526 | HR806763 | 701 | Oryza sativa indica mRNA for XA1 | 0.0 | - | - | - | ||
BDTG11 | Xa5 | Raghusail | HR614233 | 158 | Oryza sativa Indica Group cultivar IRGC 27045 xa5 gene | 4e-56 | - | - | - |
BDTG12 | Xa5 | Raghusail | HR575927 | 631 | Oryza sativa Indica Group cultivar IRGC 27045 xa5 gene | 2e-135 | - | - | - |
Bangladeshi Patnai | HR614234 | 766 | Oryza sativa Indica Group cultivar IRGC 27045 xa5 gene | 2e-135 | - | - | - | ||
BDTG13 | Xa26 | Bhasamanik | HQ832768 | 968 | Oryza sativa isolate BDTG13-Bhasa receptor kinase (Xa26) gene, | 0.0 | - | - | - |
BDTG18 | Xa26 | Lal Binni | HR806757 | 539 | Oryza sativa (japonica cultivar-group) bacterial blight resistance protein XA26 (Xa26) gene, complete cds | 0.0 | - | - | - |
Buhrimtui | HR806765 | 536 | - | Â | - | - | - | ||
Desi dhan | HR806766 | 532 | Oryza sativa (japonica cultivar-group) bacterial blight resistance protein XA26 (Xa26) gene, complete cds bacterial blight resistance protein XA26 (Xa26) gene, complete cds | 0.0 | - | - | - | ||
Raghusail | HR575921 | 490 | Oryza rufipogon receptor kinase-like protein, partial cds | 0.0 | Leucine-rich repeat receptor-like protein kinase | PLN00113 | 1.23e-05 | ||
BDTG 19 | Xa27 | Aijong | JM426578 | 638 | - | - | - | - | - |
Morianghou | JM426580 | 367 | Oryza officinalis ecotype IC203740 bacterial blight resistance protein Xa27 (Xa27) gene, complete cds | 0.0 | - | - | - | ||
BDTG20 | Xa21 | Aijong | HR806747 | 542 | Oryza sativa japonica Group Os11g0559200 mRNA | 5e-65 | Leucine rich repeat N-terminal domain | cl08472 | 1.90e-07 |
Bangladeshi Patnai | HR806741 | 188 | Oryza sativa Indica Group Xa21 gene for receptor kinase-like protein, complete cds, cultivar:II you 8220 | 9e-68 | Leucine rich repeat N-terminal domain | cl08472 | 1.77e-06 | ||
BDTG21 | Xa21 | IC524526 | HR806762 | 530 | Oryza rufipogon Xa21F pseudogene, strain:W149 | 0.0 | Leucine-rich repeat receptor-like protein kinase | PLN00113 | 2.08e-17 |
Bhasamanik | HR806751 | 451 | Oryza rufipogon Xa21F pseudogene, strain:W149 | 0.0 | Leucine-rich repeat receptor-like protein kinase | PLN00113 | 7.76e-17 | ||
BDTG22 | Xa21 | Bangladeshi Patnai | HR806742 | 561 | Oryza rufipogon Xa21F pseudogene, strain:W1236 | 0.0 | Leucine-rich repeat receptor-like protein kinase | PLN00113 | 1.35e-21 |
BDTG24 | Xa21 | Bhasamanik | HR806749 | 678 | Oryza rufipogon Xa21F pseudogene, strain:W149 | 0.0 | Protein Kinases, catalytic domain | cl09925 | 6.18e-05 |
BDTG25 | Xa21 | Bangladeshi Patnai | HR806743 | 1Â kb | Oryza rufipogon Xa21F pseudogene, strain:W593 | 0.0 | - | - | - |
BDTG26 | Xa21(A1) | IC524502 | HR806759 | 248 | Oryza longistaminata receptor kinase-like protein gene, family member A1 | 7e-110 | Leucine rich repeat N-terminal domain | cl08472 | 1.56e-09 |
Raghusail | HR575925 | 268 | Oryza longistaminata receptor kinase-like protein gene, family | 2e-144 | Â | Â | Â | ||
Aijong | HR806748 | 494 | Oryza sativa Japonica Group Os11g0559200 mRNA | 3e-72 | - | - | - | ||
Lal Binni | HR806755 | 515 | Oryza sativa Indica Group DNA, chromosome 8, BAC clone: K0110D12 | 5e-70 | - | - | - | ||
Bhasamanik | HQ832770 | 457 | Oryza longistaminata receptor kinase-like protein gene, family member A1 | 6e-116 | - | - | - | ||
BDTG27 | Xa21(A1) | Bangladeshi Patnai | HR806744 | 366 | Oryza longistaminata receptor kinase-like protein gene, family member A1 | 2e-78 | - | - | - |
Raghusail | HR575922 | 325 | Oryza longistaminata receptor kinase-like protein, family member A2 | 4e-104 | Leucine-rich repeat receptor-like protein kinase | PLN00113 | 1.15e-09 | ||
BDTG28 | Xa21(A1) | Bhasamanik | HR806752 | 359 | Oryza longistaminata receptor kinase-like protein gene, family member A1 | 1e-139 | Leucine-rich repeat receptor-like protein kinase | PLN00113 | 1.15e-09 |
BDTG29 | Xa21(A1) | Bhasamanik | HR806750 | 377 | Oryza sativa receptor kinase-like protein gene family member E | 2e-146 | Leucine-rich repeat, ribonuclease inhibitor (RI)-like subfamily. | PLN00113 | 2.67e-27 |
IC524526 | HR806761 | 379 | Oryza longistaminata receptor kinase-like protein, complete cds and family member C, | 9e-141 | - | - | - | ||
Bangladeshi Patnai | HR806745 | 382 | Oryza sativa Japonica Group Os11g0559200 mRNA, | 9e-141 | Leucine-rich repeat, ribonuclease inhibitor (RI)-like subfamily. | cl12243 | 8.45e-05 | ||
Lal Binni | HR806761 | 387 | Oryza longistaminata receptor kinase-like protein complete cds and family member C | 9e-141 | Leucine-rich repeat receptor-like protein kinase | cl15309 | 1.15e-09 | ||
IC524502 | HR806760 | 345 | Oryza sativa Japonica Group Os11g0559200 mRNA | 1e-134 | - | PLN00113 | 1.79e-07 | ||
BDTG30 | Xa21(A1) | Gobindobhog | HR806764 | 323 | Oryza sativa Japonica Group Os11g0559200 (Os11g0559200) mRNA | 2e-137 | Leucine-rich repeat receptor-like protein kinase | PLN03150 | 3.69e-11 |
Bangladeshi Patnai | HR806746 | 328 | Oryza sativa Japonica Group Os11g0559200 mRNA | 1e-134 | Catalytic NodB homology domain of the carbohydrate esterase 4 superfamily | PLN00113 | 8.21e-12 | ||
BDTG31 | Xa21(A1) | Bhasamanik | HR806753 | 376 | Oryza sativa Japonica Group Os11g0559200 mRNA | 0.0 | - | - | - |
Lal Binni | HR806758 | 384 | Oryza sativa Japonica Group Os11g0559200 mRNA | 1e-173 | - | - | - | ||
BDTG33 | Xa21(A1) | Bhasamanik | HR806754 | 267 | Oryza longistaminata receptor kinase-like protein gene, family member A1 | 9e-30 | - | - | - |
BDTG34 | Xa21(A1) | Raghusail | HR575923 | 279 | Oryza longistaminata receptor kinase-like protein gene, family member A1 | 2e-110 | - | - | - |
Gobindobhog | HR806767 | 347 | Oryza longistaminata receptor kinase-like protein gene, family member A1 | 5e-153 | Sugar transferase, PEP-CTERM/EpsH1 system associated; | 8.96e-04 | 4.35e-04 |