From: SNP frequency, haplotype structure and linkage disequilibrium in elite maize inbred lines
Adh1 | |||||||||||||||||||||||
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 |  | SNP Position in AF123535 and genotype | |||||||||||||||||||||
Haplotype | Frequency | 16920 | 16933 | 16935 | 16951 | 16978 | 17873 | 17880 | 17904 | 18071 –072 | 21129 | 29729 –730 | 21178 | 21179 | 21180 | 21181 –185 | 21199 –532 | 21359 | 21513 –514 | 21576 | 21649 –50 | 21650 –736 | 21737 |
1 | 0.031 | G | G | A | A | C | C | A | C | - | G | I | C | G | C | - | - | T | T | C | I | - | G |
2 | 0.031 | A | T | G | G | T | C | A | C | - | G | I | C | G | C | - | - | T | T | C | I | - | G |
3 | 0.125 | A | T | G | G | T | C | G | T | - | T | - | T | T | G | I | I | C | - | T | - | - | - |
4 | 0.250 | A | T | G | G | T | C | G | T | - | T | - | T | T | G | I | I | C | - | T | - | I | C |
5 | 0.250 | A | T | G | G | T | C | G | T | - | T | - | T | T | G | I | I | T | - | T | - | - | - |
6 | 0.312 | A | T | G | G | T | G | G | T | I | T | - | T | T | G | I | I | C | I | T | - | - | - |
Stearoyl-ACP-desaturase | |||||||||||||||||||||||
 |  | SNP Position in GenBank accesion AF498430 and genotype | |||||||||||||||||||||
Haplotype | Frequency | 71 | 82 | 86 | 87 | 153 | 156 | 171 | 190–194 | 200 |  |  |  |  |  |  |  |  |  |  |  |  |  |
1 | 0.222 | A | A | T | A | C | G | A | - | T | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
2 | 0.222 | G | A | T | A | C | A | A | I | C | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
3 | 0.055 | G | A | T | A | C | A | A | I | T | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
4 | 0.500 | G | C | A | T | T | A | C | - | T | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Acetyl-CoA C-acyltransferase | |||||||||||||||||||||||
 |  | SNP Position in GenBank accesion AF498472 and genotype | |||||||||||||||||||||
Haplotype | Frequency | 38 | 73 | 100 | 111 | 143 | 161 | 239 | 245 | 247 | 250 | 251 | 257 | 266 | 270 | 279 | 290 | 295 | 330–391 | 449 |  |  |  |
1 | 0.030 | C | C | A | G | C | G | A | C | G | C | G | C | T | A | T | T | A | - | T | Â | Â | Â |
2 | 0.470 | C | T | T | G | C | C | A | C | C | T | G | C | A | A | T | C | A | - | C | Â | Â | Â |
3 | 0.230 | C | T | T | G | T | C | A | C | G | T | G | C | A | A | T | C | A | - | C | Â | Â | Â |
4 | 0.260 | T | T | A | T | C | G | G | T | C | C | A | T | A | C | C | C | T | I | C | Â | Â | Â |