From: PRNP promoter polymorphisms are associated with BSE susceptibility in Swiss and German cattle
Pooled breeds from Germany and Switzerland: German Holstein, German Fleckvieh, Swiss Schwarzfleck, Swiss Simmental × Red Holstein, | ||||||||||
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Allele frequency | Genotype frequency | |||||||||
23 bp indel | n | D | I | P | D/D | D/I | I/I | P | HWEpval | |
Total | 1244 | 0.65 | 0.36 | 0.0105 | 0.41 | 0.47 | 0.12 | 0.0207 | 0.6559 | |
Control | 574 | 0.61 | 0.39 | 0.37 | 0.47 | 0.16 | ||||
BSE | 670 | 0.68 | 0.32 | 0.45 | 0.47 | 0.09 | ||||
Allele frequency | Genotype frequency | |||||||||
12 bp indel | n | D | I | P | D/D | D/I | I/I | P | HWEpval | |
Total | 1244 | 0.56 | 0.44 | 0.1209 | 0.33 | 0.47 | 0.20 | 0.1731 | 0.3931 | |
Control | 574 | 0.54 | 0.46 | 0.31 | 0.46 | 0.23 | ||||
BSE | 670 | 0.58 | 0.42 | 0.34 | 0.49 | 0.17 | ||||
23 & 12 bp indel | Haplotype frequency | |||||||||
n | D-D | D-I | I-I | P | ||||||
Total | 1244 | 0.56 | 0.09 | 0.36 | 0.0169 | |||||
Control | 574 | 0.54 | 0.07 | 0.39 | ||||||
BSE | 670 | 0.58 | 0.10 | 0.32 | ||||||
Pooled breeds from Switzerland: Swiss Schwarzfleck, Swiss Simmental × Red Holstein | ||||||||||
Allele frequency | Genotype frequency | |||||||||
23 bp indel | n | D | I | P | D/D | D/I | I/I | P | HWEpval | |
Total | 588 | 0.59 | 0.42 | 0.0295 | 0.33 | 0.50 | 0.16 | 0.0614 | 0.6306 | |
Control | 294 | 0.54 | 0.46 | 0.29 | 0.50 | 0.21 | ||||
BSE | 294 | 0.63 | 0.37 | 0.37 | 0.51 | 0.12 | ||||
Allele frequency | Genotype frequency | |||||||||
12 bp indel | n | D | I | P | D/D | D/I | I/I | P | HWEpval | |
Total | 588 | 0.48 | 0.52 | 0.4091 | 0.24 | 0.48 | 0.28 | 0.5795 | 0.6396 | |
Control | 294 | 0.46 | 0.54 | 0.23 | 0.46 | 0.31 | ||||
BSE | 294 | 0.50 | 0.50 | 0.25 | 0.50 | 0.25 | ||||
23 & 12 bp indel | Haplotype frequency | |||||||||
n | D-D | D-I | I-I | P | ||||||
Total | 588 | 0.48 | 0.11 | 0.42 | 0.0218 | |||||
Control | 294 | 0.46 | 0.08 | 0.46 | ||||||
BSE | 294 | 0.49 | 0.14 | 0.37 | ||||||
Pooled Brown breeds from Germany and Switzerland: German Brown, Swiss Brown | ||||||||||
Allele frequency | Genotype frequency | |||||||||
23 bp indel | n | D | I | P | D/D | D/I | I/I | P | HWEpval | |
Total | 516 | 0.42 | 0.59 | 0.5357 | 0.20 | 0.43 | 0.37 | 0.3574 | 0.0630 | |
Control | 288 | 0.40 | 0.60 | 0.17 | 0.46 | 0.37 | ||||
BSE | 228 | 0.43 | 0.57 | 0.24 | 0.39 | 0.38 | ||||
Allele frequency | Genotype frequency | |||||||||
12 bp indel | n | D | I | P | D/D | D/I | I/I | P | HWEpval | |
Total | 516 | 0.23 | 0.78 | 0.1432 | 0.04 | 0.38 | 0.58 | 0.1317 | 0.4117 | |
Control | 288 | 0.21 | 0.79 | 0.02 | 0.38 | 0.60 | ||||
BSE | 228 | 0.26 | 0.74 | 0.07 | 0.39 | 0.54 | ||||
23 & 12 bp indel | Haplotype frequency | |||||||||
n | D-D | D-I | I-I | P | ||||||
Total | 516 | 0.23 | 0.19 | 0.58 | 0.2439 | |||||
Control | 288 | 0.21 | 0.20 | 0.59 | ||||||
BSE | 228 | 0.26 | 0.17 | 0.57 |