Table 1 Overview of data files and data sets used in this study

Data file 1

Chromosome squash of Lavendula angustifolia root tips

Portable Network Graphic (.png)

Figshare (https://doi.org/10.6084/m9.figshare.23982972.v3) [5]

Data file 2

Lavendula angustifolia libraries used in this study

Spreadsheet (.xlxs)

Figshare (https://doi.org/10.6084/m9.figshare.23982972.v3) [5]

Data file 3

k-mer frequency distribution plot and ploidy estimation

Portable Document Files (.pdf)

Figshare (https://doi.org/10.6084/m9.figshare.23982972.v3) [5]

Data file 4

Hi-C contact map

Portable Document Files (.pdf)

Figshare (https://doi.org/10.6084/m9.figshare.23982972.v3) [5]

Data file 5

Assembly metrics for the Lavandula angustifolia assembly

Spreadsheet (.xlxs)

Figshare (https://doi.org/10.6084/m9.figshare.23982972.v3) [5]

Data file 6

Pseudomolecule lengths and gap content for the Lavandula angustifolia assembly

Spreadsheet (.xlxs)

Figshare (https://doi.org/10.6084/m9.figshare.23982972.v3) [5]

Data file 7

k-mer comparison plot

Portable Document Files (.pdf)

Figshare (https://doi.org/10.6084/m9.figshare.23982972.v3) [5]

Data file 8

BUSCO results on the Lavandula angustifolia assembly and annotation

Spreadsheet (.xlxs)

Figshare (https://doi.org/10.6084/m9.figshare.23982972.v3) [5]

Data file 9

Repetitive sequence content in the Lavandula angustifolia assembly

Spreadsheet (.xlxs)

Figshare (https://doi.org/10.6084/m9.figshare.23982972.v3) [5]

Data file 10

Lavandula angustifolia gene annotation summary

Spreadsheet (.xlxs)

Figshare (https://doi.org/10.6084/m9.figshare.23982972.v3) [5]

Data set 1

Oxford Nanopore Technologies High molecular weight genomic DNA, SRR15929008

Fastq file (.fastq.gz)

NCBI (https://identifiers.org/ncbi/insdc.sra:SRR15929008) [7]

Data set 2

Oxford Nanopore Technologies High molecular weight genomic DNA, SRR15929007

Fastq file (.fastq.gz)

NCBI (https://identifiers.org/ncbi/insdc.sra:SRR15929007) [8]

Data set 3

Oxford Nanopore Technologies High molecular weight genomic DNA, SRR15929001

Fastq file (.fastq.gz)

NCBI (https://identifiers.org/ncbi/insdc.sra:SRR15929001) [9]

Data set 4

Oxford Nanopore Technologies High molecular weight genomic DNA, SRR15929000

Fastq file (.fastq.gz)

NCBI (https://identifiers.org/ncbi/insdc.sra:SRR15929000) [10]

Data set 5

Oxford Nanopore Technologies High molecular weight genomic DNA, SRR15928999

Fastq file (.fastq.gz)

NCBI (https://identifiers.org/ncbi/insdc.sra:SRR15928999) [11]

Data set 6

Oxford Nanopore Technologies High molecular weight genomic DNA, SRR15928998

Fastq file (.fastq.gz)

NCBI (https://identifiers.org/ncbi/insdc.sra:SRR15928998) [12]

Data set 7

Oxford Nanopore Technologies High molecular weight genomic DNA, SRR15928997

Fastq file (.fastq.gz)

NCBI (https://identifiers.org/ncbi/insdc.sra:SRR15928997) [13]

Data set 8

Oxford Nanopore Technologies High molecular weight genomic DNA, SRR15928996

Fastq file (.fastq.gz)

NCBI (https://identifiers.org/ncbi/insdc.sra:SRR15928996) [14]

Data set 9

Oxford Nanopore Technologies High molecular weight genomic DNA, SRR15928995

Fastq file (.fastq.gz)

NCBI (https://identifiers.org/ncbi/insdc.sra:SRR15928995) [15]

Data set 10

Oxford Nanopore Technologies High molecular weight genomic DNA, SRR15928994

Fastq file (.fastq.gz)

NCBI (https://identifiers.org/ncbi/insdc.sra:SRR15928994) [16]

Data set 11

Oxford Nanopore Technologies High molecular weight genomic DNA, SRR15929006

Fastq file (.fastq.gz)

NCBI (https://identifiers.org/ncbi/insdc.sra:SRR15929006) [17]

Data set 12

Oxford Nanopore Technologies High molecular weight genomic DNA, SRR15929005

Fastq file (.fastq.gz)

NCBI (https://identifiers.org/ncbi/insdc.sra:SRR15929005) [18]

Data set 13

Oxford Nanopore Technologies High molecular weight genomic DNA, SRR15929004

Fastq file (.fastq.gz)

NCBI (https://identifiers.org/ncbi/insdc.sra:SRR15929004) [19]

Data set 14

Oxford Nanopore Technologies High molecular weight genomic DNA, SRR15929003

Fastq file (.fastq.gz)

NCBI (https://identifiers.org/ncbi/insdc.sra:SRR15929003) [20]

Data set 15

Oxford Nanopore Technologies High molecular weight genomic DNA, SRR15929002

Fastq file (.fastq.gz)

NCBI (https://identifiers.org/ncbi/insdc.sra:SRR15929002) [21]

Data set 16

Illumina WGS DNA, SRR15915200

Fastq file (.fastq.gz)

NCBI (https://identifiers.org/ncbi/insdc.sra:SRR15915200) [22]

Data set 17

Illumina Hi-C DNA, SRR15931069

Fastq file (.fastq.gz)

NCBI (https://identifiers.org/ncbi/insdc.sra:SRR15931069) [30]

Data set 18

Illumina Hi-C DNA, SRR15931068

Fastq file (.fastq.gz)

NCBI (https://identifiers.org/ncbi/insdc.sra:SRR15931068) [31]

Data set 19

Genome assembly of Lavandula angustifolia

fasta file (.fa)

NCBI (https://identifiers.org/assembly/GCA_028984105) [35]

Data set 20

Illumina RNA-seq: RNA-seq-mature leaf, SRR15915199

Fastq file (.fastq.gz)

NCBI (https://identifiers.org/ncbi/insdc.sra:SRR15915199) [38]

Data set 21

Illumina RNA-seq: immature leaf, SRR15915191

Fastq file (.fastq.gz)

NCBI (https://identifiers.org/ncbi/insdc.sra:SRR15915191) [39]

Data set 22

Illumina RNA-seq: inflorescence, SRR15915190

Fastq file (.fastq.gz)

NCBI (https://identifiers.org/ncbi/insdc.sra:SRR15915190) [40]

Data set 23

Illumina RNA-seq: stem, SRR15915189

Fastq file (.fastq.gz)

NCBI (https://identifiers.org/ncbi/insdc.sra:SRR15915189) [41]

Data set 24

High Confidence Gene Models cDNA

fasta file (.fa)

Figshare (https://doi.org/10.6084/m9.figshare.23982972.v3) [5]

Data set 25

High Confidence Gene Models CDS

fasta file (.fa)

Figshare (https://doi.org/10.6084/m9.figshare.23982972.v3) [5]

Data set 26

High Confidence Gene Models GFF3

GFF3 file (.gff3)

Figshare (https://doi.org/10.6084/m9.figshare.23982972.v3) [5]

Data set 27

High Confidence Gene Models Proteins

fasta file (.fa)

Figshare (https://doi.org/10.6084/m9.figshare.23982972.v3) [5]

Data set 28

Representative High Confidence Gene Models cDNA

fasta file (.fa)

Figshare (https://doi.org/10.6084/m9.figshare.23982972.v3) [5]

Data set 29

Representative High Confidence Gene Models CDS

fasta file (.fa)

Figshare (https://doi.org/10.6084/m9.figshare.23982972.v3) [5]

Data set 30

Representative High Confidence Gene Models GFF3

GFF3 file (.gff3)

Figshare (https://doi.org/10.6084/m9.figshare.23982972.v3) [5]

Data set 31

Representative High Confidence Gene Models List

text file (.txt)

Figshare (https://doi.org/10.6084/m9.figshare.23982972.v3) [5]

Data set 32

Representative High Confidence Gene Models Proteins

fasta file (.fa)

Figshare (https://doi.org/10.6084/m9.figshare.23982972.v3) [5]

Data set 33

Working Gene Models cDNA

fasta file (.fa)

Figshare (https://doi.org/10.6084/m9.figshare.23982972.v3) [5]

Data set 34

Working Gene Models CDS

fasta file (.fa)

Figshare (https://doi.org/10.6084/m9.figshare.23982972.v3) [5]

Data set 35

Working Gene Models GFF3

GFF3 file (.gff3)

Figshare (https://doi.org/10.6084/m9.figshare.23982972.v3) [5]

Data set 36

Working Gene Models Proteins

fasta file (.fa)

Figshare (https://doi.org/10.6084/m9.figshare.23982972.v3) [5]

Data set 37

Working Gene Models Functional Annotation

text file (.txt)

Figshare (https://doi.org/10.6084/m9.figshare.23982972.v3) [5]

Data set 38

Lavandula angustifolia genome sequence

fasta file (.fa)

Figshare (https://doi.org/10.6084/m9.figshare.23982972.v3) [5]