Figure 3
From: Single-feature polymorphism discovery by computing probe affinity shape powers
Single-feature polymorphism (SFP) plots. A: Probe set Contig11534_at in three Golden Promise samples (broken red) compared to three Morex samples (solid black). B: Contig11534_at in 19 Golden Promise samples (broken red) compared to 17 Morex samples (solid black) from six different tissue types. C: Contig16609_at in three barley Bowman samples (broken red) compared to three Bowman-cul2 samples (solid black). The x-axis represents the 11 PM probes. The y-axis represents log2 intensity of perfect match (PM) probes before normalization (raw data panel), the log2 normalized intensity subtracted by the expression index of that probe set (affinity panel), the probe affinity (affinity difference panel), the weight score of the SFPs after the 2.5 cutoff (weight score panel). The three SFPs detected in Contig11534_at (4,5,7) contain verified polymorphisms between barley Golden Promise and Morex (A, B). The SFP Contig16609_at probe 10 in barley Bowman-cul2 was verified by sequencing (C).