| Probes | Polymorphic | Non-polymorphic |
---|
GeneChip2 | 250,811 | 401 | 2,200 |
SAM FDR0.13 | 15,026 | 305 | 84 |
Weight score2.54 | 9,603 | 284 | 48 |
Rate (%)5 | 3.82 | 70.82 | 2.18 |
- 1 Barley1 GeneChip transcript data obtained from two genotypes (Morex and Golden Promise) from six tissue types [47] were used in this analysis.
- 2 GeneChip indicates the Barley1 GeneChip which contains 250,811 probes. There are 401 polymorphic probes and 2200 non-polymorphic probes sequence verified between Morex and Golden Promise in this dataset [47].
- 3 SAM FDR0.1 indicates the number of SFPs detected using a false discovery rate (FDR) 0.1 in the SAM (significance analysis of microarray) analysis of the bioconductor siggenes package.
- 4 Weight score 2.5 indicates the number of SFPs detected after a weight score cutoff value of 2.5 was applied.
- 5 Rate (%) indicates the percent SFPs with a weight score cutoff of 2.5 divided by the number of polymorphic, non-polymorphic, or all probes.