Table 1 Positions and minor allele frequencies of the rSNPs observed in crossbred cattle (n = 141) and Angus (n = 15), Charolais (n = 15) and Limousin (n = 15) breeds
SNP | SNP position relative to TSS | dbSNP submitter snp (ss) no | Alternate alleles (1/2) | Minor Allele Frequency | |||
|---|---|---|---|---|---|---|---|
| Â | Â | Â | Â | Crossbred animals | ANG | CHAR | LIM |
SNP1 | -24 | 275515731 | C/T | 0.245 (T) | 0.100 (T) | 0.233 (T) | 0.300 (T) |
SNP2 | -307 | 275515732 | C/T | 0.436 (C) | 0.400 (T) | 0.433 (C) | 0.500 (T) |
SNP3 | -672 | 275515733 | A/G | 0.227 (A) | 0.100 (A) | 0.233 (A) | 0.333 (A) |
SNP4 | -687 | 275515734 | C/G | 0.142 (G) | 0.100 (G) | 0.167 (G) | 0.033 (G) |
SNP5 | -733 | 275515735 | C/T | 0.241 (T) | 0.100 (T) | 0.233 (T) | 0.300 (T) |
SNP6 | -944 | 275515736 | C/T | 0.082 (T) | 0.0 (T) | 0.067 (T) | 0.0 (T) |
SNP7 | -961 | 275515737 | A/C | 0.014 (C) | 0.0 (A) | 0.167 (A) | 0.267 (A) |