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Table 1 Description of markers tested in dairy and beef cattle samples

From: Haplotypes that include the integrin alpha 11 gene are associated with tick burden in cattle

Locus Position Btau4.0 Ref1 Sample2 N3 p04 HWE5
p-value
rs29027392 9844454 BTA DTE 820 0.03 0.0080
(1 breed)
rs41613225 9874407 BTA DTE 820 0.34 0.0103
(1 breed)
rs41664397 11938389 BTA DTE 820 0.15 0.0053
(1 breed)
Ars-BFGL-NGS-70946 14471603 Illumina DTE 819 0.38 0.0173
(1 breed)
rs29025980 14925193 BTA DTE 875 0.23 < 0.05
(3 breeds)
    BRM 525 0.05 1.34e-38
    COM 196 0.27 2.36e-24
rs43616884 14937129 BTB DTE 915 0.28 ns
    BRM 546 0.05 0.0277
    COM 207 0.20 ns
rs29025985 14943961 BTA (GWAS) DTE 812 0.68 ns
    BRM 464 0.09 ns
    COM 186 0.37 ns
rs29025981 14944238 BTA (GWAS) DTE 859 0.32 ns
    BRM 517 0.91 ns
    COM 201 0.63 ns
rs41594962 14979585 BTA DTE 1042 0.29 0.0256
(1 breed)
    BRM 545 0.01 ns
    COM 207 0.20 ns
ss161109814 14996440 This paper DTE 1037 0.40 ns
    BRM 526 0.06 ns
    COM 205 0.24 ns
ss161109807 15002496 This paper DTE 1027 0.28 ns
    BRM 525 0.62 ns
    COM 210 0.49 ns
ss161109797 15003391 This paper DTE 1032 0.04 0.0337
(1 breed)
    BRM 526 0.05 ns
    COM 212 0.03 ns
rs29023635 15034937 BTA DTE 914 0.69 ns
    BRM 549 0.06 ns
    COM 213 0.41 ns
rs29023639 15035100 BTA DTE 296 < 0.01 ns
    BRM 548 < 0.01 ns
    COM 181 0.01 ns
rs29014770 15102776 BTA DTE 901 0.68 ns
    BRM 544 0.99 ns
    COM 202 0.72 ns
rs41657550 17147707 BTA DTE 820 0.68 ns
Ars-BFGL-NGS-25507 18216232 Illumina DTE 819 0.75 < 0.05
(2 breeds)
  1. 1 Database in which the markers were described, BTA - BCM Interbreed SNP, BTB - BCM Genome Assembly SNP, Illumina - BovineSNP50®, GWAS - significant markers at the genome wide association study.
  2. 2 DTE - dairy tick experiment, BRM - Brahman, COM - Tropical Composite.
  3. 3 Number of individuals tested.
  4. 4 Frequency of the allele closer to a in the alphabet.
  5. 5 Hardy-Weinberg equilibrium test p-value, ns - not significant.