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Table 1 The configuration of two SNP combinations

From: Mapping Haplotype-haplotype Interactions with Adaptive LASSO

Observed Genotype Diplotype Composite Diplotype
  Configuration Frequency Relative Freq.  
11/11 [11][11] p 11 2 1 HH
11/12 [11][12] 2 p11p12 1 H H ¯
11/22 [12][12] p 12 2 1 H ¯ H ¯
12/11 [11][21] 2 p11p21 1 H ¯ H ¯
12/12 { [ 11 ] [ 22 ] [ 12 ] [ 21 ] { p 11 p 22 p 12 p 21 { ϕ 1 ϕ { H H ¯ H ¯ H ¯
12/22 [12][22] 2 p12p22 1 H ¯ H ¯
22/11 [21][21] p 21 2 1 H ¯ H ¯
22/12 [21][22] 2 p21p22 1 H ¯ H ¯
22/22 [22][22] p 22 2 1 H ¯ H ¯
  1. Where ϕ = p 11 p 22 p 11 p 22 + p 12 p 21