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Table 2 SNP allele frequencies between cases and controls

From: Genetic predisposition for femoral neck stress fractures in military conscripts

   Gene Sequence variation Detection method Allele Allele frequencies (%) p-value
     Controls Cases  
   VDR c.2T > C, Met1Thr
(rs10735810)
Fok I C 153 (64) 90 (62)  
    T 87 (36) 54 (37) NS
  c.1024+283G > A
(rs1544410)
Bsm I A 90 (38) 45 (31)  
    G 150 (63) 99 (69) NS
  c.1056T > C, Ile352Ile
(rs731236)
Taq I C 88 (37) 45 (31)  
    T 152 (63) 99 (69) NS
   IL6 -174G > C
(rs1800795)
Nla III C 126 (52.5) 72 (50)  
    G 114 (47.5) 72 (50) NS
   CTR c.1377C > T, Pro463Leu
(rs1801197)
Alu I C 73 (30) 35 (24)  
    T 167 (70) 109 (76) NS
   COL1A1 c.101+1024G > T
(rs1800012)
Sequencing G 204 (85) 123 (85)  
    T 36 (15) 21 (15) NS
  c.1930-14T > C
(rs2696247)
CSGE C 41 (17) 28 (19)  
    T 199 (83) 116 (81) NS
  c.3261C > T
(rs2586488)
Eco57 I C 158 (66) 87 (60)  
    T 82 (34) 57 (40) NS
   COL1A2 c.280-68A > G
(rs406226)
CSGE A 206 (86) 120 (83)  
    G 34 (14) 24 (17) NS
  c.1666-41G > A
(rs2301643)
Msl I A 32 (13) 24 (17)  
    G 208 (87) 120 (83) NS
  c.2350-89ins38bp
(rs3216902)
CSGE insertion 151 (63) 96 (67)  
    no ins. 89 (37) 48 (33) NS
   LRP5 c.2007G > A, E644E
(rs2277268)
Sequencing G 231 (96) 131 (91)  
    A 9 (4) 13 (9) 0.031 1
  c.2074G > A, V667M
(rs4988321)
Sequencing G 235 (98) 137 (95)  
    A 5 (2) 7 (5) NS
  c.3432A > G, V1119V
(rs556442)
Sequencing A 200 (83) 112 (78)  
    G 40 (17) 32 (22) NS
  c.4064C > T, A1330V
(rs3736228)
Sequencing C 227 (95) 134 (93)  
    T 13 (5) 10 (7) NS
  1. NS = not significant; GenBank Accession numbers COL1A1 NM_000088, COL1A2 NM_000089, VDR NM_000376, LRP5 NM_002335, CTR NM_001742; 1NS permutation p-value, p = 0.21.