An annotated genetic map of loblolly pine based on microsatellite and cDNA markers

BMC Genomic Data

Table 2 Marker pairs with redundancy for a locus

Redundant marker	GenBank accession	UniSTS ID	Cit^a	Mapped marker	LG	Evidence^b
estPtIFG_0066_a	H75018	n/a	[13]	PtIFG_66_1	2	B
estPtIFG_0606_a	n/a	n/a	[13]	PtIFG_606_1	6	B
estPtIFG_1165_a	H75179	n/a	[13]	estPtIFG_1950_a	6	A
estPtIFG_1635_a	H75110	n/a	[13]	PtIFG_1635_A	10	B
estPtIFG_2009_a	n/a	n/a	[13]	PtIFG_2009_A	6	B
estPtIFG_2253_a	H75063	n/a	[13]	PtIFG_2253_A	1	B
estPtIFG_2610E(S)	H75220	n/a	[13]	estPtIFG_1950_a	6	A
estPtIFG_8496_a	AA739536	516058	[14]	estPtIFG_9198_a	1	A
estPtIFG_8596_a	AA739594	516051	[14]	estPtIFG_9092_a	5	A
estPtIFG_8843_a	AA739759	516049	[12]	estPtIFG_9053_a	1	A
estPtIFG_8907_a	AA739797	516254	[13]	PtSIFG_0219	8	A
estPtIFG_AGP-3	n/a	n/a	[12]	SsrPt_ctg7444	9	C
estPtNCS_20G2_a	AI812850	n/a	[12]	estPtIFG_9053_a	1	A
estPtNCS_6C12F_a	AA556811	516381	[14]	PpSIFG_3145	3	C
PtIFG_1576_1	n/a	n/a	[11]	estPtIFG_1576_a	1	B
PtIFG_1635_C	H75110	n/a	[11]	PtIFG_1635_A	10	B
PtIFG_1A2_1	n/a	n/a	[11]	PtIFG_1A2_C	4	B
PtIFG_2145_5	H75056	n/a	[18]	PtIFG_2145_76	3	B
PtIFG_2146_31	n/a	n/a	[11]	PtIFG_2146_2	2	B
PtIFG_2540_2	H75131	n/a	[11]	estPtIFG_0893_a	5	A
PtIFG_2610_A	H75221	n/a	[11]	estPtIFG_1950_a	6	A
PtIFG_2889_21	H75234	n/a	[11]	estPtIFG_2889_a	3	B
PtIFG_2931_b	H75250	n/a	[11]	PtIFG_2931_A	1	B
PtTX3118	AF277845	508481	[40]	PtSIFG_1325	2	C
SsrPt_AA739797	AA739797	516382	[27]	PtSIFG_0219	8	A
SsrPt_ctg4487a	DR159792	n/a	[27]	SsrPt_ctg7141	3	A
SsrPt_ctg4487b	DR159792	516389	[27]	SsrPt_ctg7141	3	A
SsrPt_ctg4698	BG275886	516390	[27]	PtSIFG_1325	2	A

n/a = not available.
^a The citation in which the redundant marker was first reported. Additional file 2 lists the citations, GenBank accession numbers, and UniSTS IDs of the mapped markers.
^b Evidence for assignment of redundant status: all markers mapped within 3 cM of each other, "A" denotes marker pairs assigned to the same UniGene, "B" denotes marker pairs derived from the same DNA clone, "C" denotes marker pair sequences with a BLASTn E-value less than 4 × 10^-43.

ISSN: 2730-6844