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Table 1 List of the SNP markers significantly associated with skatole levels in the pig population analyzed

From: The distal end of porcine chromosome 6p is involved in the regulation of skatole levels in boars

   Allele Frequency    
SNP Position Major Allele Minor Allele Regression Coefficient p-value q-value
Region 1       
MARC0019446 636,696 T: 0.52 G: 0.48 0.26 0.0000323 0.02
ASGA0084674 645,690 T: 0.51 G: 0.49 0.26 0.0000420 0.02
Region 2       
MARC0044930 1,795,517 G: 0.77 A: 0.23 0.31 0.0000331 0.02
ASGA0096130 1,802,015 A: 0.74 C: 0.26 0.24 0.0002333 0.05
ASGA0098975 1,939,519 G: 0.76 A: 0.24 0.32 0.0000758 0.02
ALGA0107039 2,113,937 G: 0.77 T: 0.23 0.30 0.0000352 0.02
ALGA0116170 2,117,567 G: 0.76 T: 0.24 0.27 0.0002347 0.05
ALGA0115841 2,125,025 C: 0.76 T: 0.24 0.30 0.0002955 0.05
ALGA0110693 2,156,144 C: 0.73 A: 0.27 0.31 0.0002065 0.05
Region 3       
ALGA0115538 3,353,995 G: 0.70 A: 0.30 0.25 0.0003122 0.05
MARC0034202 3,573,079 G: 0.79 A: 0.21 0.27 0.0002793 0.05
ALGA0034369 3,596,641 A: 0.75 G: 0.25 0.31 0.0000290 0.02
MARC0067306 3,923,036 T: 0.73 C: 0.27 -0.26 0.0000801 0.03
MARC0019712 3,936,297 C: 0.79 T: 0.21 0.29 0.0001532 0.04
Isolated Markers       
MARC0009863 5,222,760 G: 0.51 A: 0.49 0.24 0.0001098 0.03
ALGA0113531 5,901,175 T: 0.55 G: 0.45 -0.22 0.0002927 0.05
  1. All markers are located on SSC6.