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Table 1 Oligonucleotides

From: Characterisation of a novel paralog of scavenger receptor class B member I (SCARB1) in Atlantic salmon (Salmo salar)

Oligonucleotide combination

Oligonucleotide forward (5'-3')

Oligonucleotide reverse (5'-3')

Size (bp)

1: Intron 3

AGCGTCTTCAGAAGCAGAAC

CCACATCAGCTCTCCTACAG

350

2: Intron 4

CTACGACAGCAAGCTGGTGGACTT

GGTCAAGCCGTTCCATGAGTTCAC

600-700

3: Intron 5

CTCCCCAGTGTAACATGATCAACGG

CAGATTGTCTGCAGGGACAGAAGC

600

4: Intron 10

GGGAAGATCTCAGAGGTTGT

TACACCATCACCATTGGCAA

500

5: Exon 4 and 5

CTACGACAGCAAGCTGGTGGACTT

GATGTCATCTTCGCCGGTATGGATT

138

6: cDNA

CGTTGGACCAATCATTATCGACA

TCTGTAGTGTAGTAGTACAGCTCCCAGAG

1308

7: cDNA

ATGAATAAATCTAAATTAGCGATCGGA

TGTCATCTTCGCCGGTATGGATT

672

8: cDNA

TGATGGAGAACTTGCCGTTCC

CCCTGCAGCACTGGGCTAGACT

1054

  1. Oligonucleotides used for PCR-amplification, QTL-mapping and real-time PCR of the two SCARB1 paralogs in Atlantic salmon.