From: A comparison of statistical methods for genomic selection in a mice population
Splitting | Within-family | Across-family | ||||||||
---|---|---|---|---|---|---|---|---|---|---|
Trait | W6W | WGS | BL | %CD8+ | CD4+/ CD8+ | W6W | WGS | BL | %CD8+ | CD4+/ CD8+ |
emBayesB | 0.42 | 0.30 | 0.26 | 0.28 | 0.05 | 0.22 | 0.47 | 0.33 | 0.06 | 0.03 |
RR_GBLUP | 0.35 | 0.41 | 0.27 | 0.19 | 0.11 | 0.30 | 0.36 | 0.28 | 0.10 | 0.09 |
SS_BY | 0.32 | 0.36 | 0.16 | 0.13 | 0.07 | 0.40 | 0.30 | 0.20 | 0.09 | 0.03 |
SS_ABS | 0.39 | 0.34 | 0.28 | 0.04 | 0.17 | 0.20 | 0.28 | 0.34 | 0.06 | 0.06 |
RKHS | 0.38 | 0.33 | 0.33 | 0.24 | 0.06 | 0.30 | 0.41 | 0.28 | 0.28 | 0.06 |
SVR | 0.41 | 0.34 | 0.33 | 0.25 | 0.08 | 0.28 | 0.39 | 0.35 | 0.30 | 0.05 |
BayesCpi | 0.37 | 0.28 | 0.27 | 0.28 | 0.07 | 0.31 | 0.38 | 0.25 | 0.12 | 0.07 |
BayesC | 0.34 | 0.44 | 0.25 | 0.27 | 0.08 | 0.29 | 0.37 | 0.26 | 0.19 | 0.06 |
LASSO | 0.45 | 0.29 | 0.24 | 0.24 | 0.10 | 0.30 | 0.36 | 0.38 | 0.10 | 0.03 |
RF | 0.40 | 0.35 | 0.32 | 0.16 | 0.07 | 0.29 | 0.62 | 0.27 | 0.16 | 0.13 |