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Table 6 Additive 1 and dominance estimates of SNPs within genes that have general association 2 with feed efficiency

From: Single nucleotide polymorphisms and haplotypes associated with feed efficiency in beef cattle

Indicator

SNP

BTA

Allele

Gene symbol

Gene name

Additive3

Dominance3

P-Value

RFI

rs109500421

8

C/T*

CNTFR

Ciliary neurotrophic factor receptor

−0.01 ± 0.05

0.24 ± 0.06

4.54E-05

 

rs108942504

22

A/G*

TMEM40

Transmembrane protein 40

0.36 ± 0.10

−0.09 ± 0.11

9.04E-06

RADG

rs108964818

15

C/T*

KDELC2

KDEL (Lys-Asp-Glu-Leu) containing 1-like

0.35 ± 0.06

0.34 ± 0.06

3.44E-08

 

rs41620774

15

A/C*

ELMOD1

ELMO/CED-12 domain containing 1

0.12 ± 0.03

0.13 ± 0.03

5.58E-05

 

rs42342964

23

G*/T

PAK1IP1

PAK1 interacting protein 1

0.01 ± 0.01

0.05 ± 0.01

9.16E-06

RIG

rs108964818

15

C/T*

KDELC2

KDEL (Lys-Asp-Glu-Leu) containing 1-like

2.96 ± 0.56

2.83 ± 0.57

7.43E-07

EI

rs109500421

8

C/T*

CNTFR

Ciliary neurotrophic factor receptor

−0.02 ± 0.05

0.23 ± 0.06

5.03E-05

 

rs109709275

15

A/G*

GRAMD1B

GRAM domain containing 1B

0.05 ± 0.05

−0.18 ± 0.05

6.29E-05

 

rs108942504

22

A/G*

TMEM40

Transmembrane protein 40

0.32 ± 0.10

−0.05 ± 0.11

2.29E-05

EG

rs110340232

1

G*/T

RAB6B

RAB6B, member RAS oncogene family

0.01 ± 0.01

0.04 ± 0.01

5.07E-05

 

rs110787048

4

A*/G

DPP6

Dipeptidyl-peptidase 6

−0.03 ± 0.01

−0.04 ± 0.01

9.32E-05

 

rs110051312

8

A*/C

PTPN3

Protein tyrosine phosphatase, non-receptor type 3

0.04 ± 0.03

0.09 ± 0.03

5.46E-05

 

rs110196238

8

C*/T

PTPN3

Protein tyrosine phosphatase, non-receptor type 3

0.04 ± 0.03

0.09 ± 0.03

5.09E-05

 

rs41611457

12

A/G*

ENOX1

Ecto-NOX disulfide-thiol exchanger 1

−0.04 ± 0.01

0.03 ± 0.01

6.70E-05

 

rs108964818

15

C/T*

KDELC2

KDEL (Lys-Asp-Glu-Leu) containing 1-like

0.37 ± 0.07

0.37 ± 0.07

4.42E-07

 

rs41620774

15

A/C*

ELMOD1

ELMO/CED-12 domain containing 1

0.12 ± 0.03

0.15 ± 0.03

2.94E-05

 

rs109889052

19

C/T*

PIK3R6

Phosphoinositide-3-kinase, regulatory subunit 6

−0.27 ± 0.07

0.29 ± 0.07

7.79E-05

  1. 1Additive estimate relative to the minor allele.
  2. 2P-value < 0.0001;
  3. 3Estimate ± standard error;
  4. *Minor allele.