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Table 5 Enriched biological processes for 39 genes holding significant SNPs ( P -value < 0.05) for feed efficiency traits

From: Single nucleotide polymorphisms for feed efficiency and performance in crossbred beef cattle

Biological process No P value Genes
Ion transport 8 0.006 618639, 518905, 281701, 530393, 540113, 510792, 282411, 614299
Cation transport 7 0.004 618639, 518905, 530393, 540113, 510792, 282411, 614299
Phosphorus metabolic process 7 0.057 504429, 533815, 540329, 540113, 100048947, 281848, 512125
Phosphorylation 6 0.072 504429, 533815, 540113, 100048947, 281848, 512125
Metal ion transport 5 0.034 618639, 518905, 530393, 282411, 614299
Regulation of transcription 5 0.762 517336, 509259, 529124, 540474, 784720
Protein amino acid phosphorylation 5 0.126 504429, 533815, 100048947, 281848, 512125
Monovalent inorganic cation transport 4 0.060 618639, 518905, 540113, 614299
Regulation of transcription, DNA-dependent 4 0.722 517336, 529124, 540474, 784720
Transmembrane transport 4 0.236 512725, 281701, 540113, 282411
Proteolysis 3 0.756 617222, 524684, 534774
Intracellular signalling cascade 3 0.643 530393, 614507, 281848
Regulation of transcription from RNA polymerase II promoter 3 0.290 517336, 540474, 784720
Transcription 3 0.636 509259, 529124, 784720
RNA processing 3 0.320 100048947, 512925, 281712
Potassium ion transport 2 0.359 618639, 614299
Nucleobase, nucleoside, nucleotide and nucleic acid biosynthetic process 2 0.497 540113, 510792
Calcium ion transport 2 0.279 530393, 282411
Regulation of homeostatic process 2 0.152 530393, 282411
Response to abiotic stimulus 2 0.448 509602, 530393
Negative regulation of programmed cell death 2 0.476 509602, 282032
Protein complex biogenesis 2 0.545 509259, 281848
Determination of symmetry 2 0.067 497208, 530393
Microtubule-based process 2 0.441 497208, 512287
Blood vessel morphogenesis 2 0.351 282689, 282032
Protein transport 2 0.833 282044, 614507
Protein amino acid autophosphorylation 2 0.130 281848, 512125
Neurological system process 2 0.679 281701, 538198
Oxidation reduction 2 0.899 280951, 532512
mNRA metabolic process 2 0.495 100048947, 281712
Cell-cell adhesion 1 1.000 540672
Protein amino acid glycosylation 1 1.000 532545
Muscle cell development 1 1.000 529759
Amino acid transport 1 1.000 511955
  1. P value of the enriched biological process for genes’ list having significant SNP.