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Table 1 Joint zygote probabilities of the QTL genotypes at QTL Q and two-marker genotypes at markers M1 and M2, as expressed in terms of zygote configurations in a natural population

From: Genome-wide Two-marker linkage disequilibrium mapping of quantitative trait loci

Marker Joint marker-QTL genotype frequency
Genotype   Frequency qq(0) Qq(1) QQ(2)
m 1 m 1 m 2 m 2 (00) p 00 2 p 000 2 2p010p000 p 010 2
    (n000) (n010) (n020)
m 1 m 1 M 2 m 2 (01) 2p01p00 2p001p000 2p011p000 + 2p010p001 2p010p011
    (n001) (n011) (n021)
m 1 m 1 M 2 M 2 (02) p 01 2 p 001 2 2p011p001 p 011 2
    (n002) (n012) (n022)
M 1 m 1 m 2 m 2 (10) 2p00p10 2p100p000 2p110p000 + 2p100p010 2p110p010
    (n100) (n110) (n120)
M 1 m 1 M 2 m 2 (11) 2p11p00 2p101p000 + 2p100p001 2p111p000 + 2p110p001 2p111p010 + 2p110p011
   + 2p10p01   + 2p101p010 + 2p100p011  
    (n101) (n111) (n121)
M 1 m 1 M 2 M 2 (12) 2p11p01 2p101p001 2p111p001 + 2p101p011 2p111p011
    (n102) (n112) (n122)
M 1 M 1 m 2 m 2 (20) p 10 2 p 100 2 2p110p100 p 110 2
    (n200) (n210) (n220)
M 1 M 1 M 2 m 2 (21) 2p11p10 2p101p100 2p111p100 + 2p110p101 2p110p111
    (n201) (n211) (n221)
M 1 M 1 M 2 M 2 (22) p 11 2 p 101 2 2p111p101 p 111 2
    (n202) (n212) (n222)