Skip to main content

Table 3 Genes and QTLs that are close to SNPs associated with RFI and DMI

From: Genome-wide association analysis of feed intake and residual feed intake in Nellore cattle

SNP (trait) Gene Gene IDa Dist gene (kb)b Strand Dist QTL (Mb)c QTL IDd Full gene name (description)
rs109784719 (DMI) STMN2 534991 27.4 + 44.1 #4365 Stathmin-like 2
rs29024524 (DMI) CCDC171 538331 0 - 12.1 #4425 Coiled-coil domain containing 171
  PSIP1 282011 48.3 +    PC4 and SFRS1 interacting protein 1
  SNAPC3 511366 89.3 -    Small nuclear RNA activating comp 3
rs134003539 (DMI) ZNF804B 100295505 0 + 4.5 #10584 Zinc finger protein 804B
rs41660853 (RFI) ANXA10 505322 0 + 7.1 #4353 Annexin A10
  DDX60 787280 0 - 7.9 #5274 DEAD (Asp-Glu-Ala-Asp) box polypep 60
rs135777172 (RFI) GPR132 539146 14.8 + 2.2 #4462 G protein-coupled receptor 132
  CDCA4 527837 40.7 -    Cell division cycle associated 4
  AHNAK2 527701 84.9 -    AHNAK nucleoprotein 2
  BRF1 618161 93.3 -    RNA polymerase III transcr init factor 90
  1. aIdentification of the gene according to Ensembl genes database 72.
  2. bDistance in kb of SNP for the gene.
  3. cDistance in Mb of SNP for the closer QTL described in trait associated with SNP.
  4. dIdentification of QTL according to the cattle QTLdb database.