Genome-wide association analysis of feed intake and residual feed intake in Nellore cattle

BMC Genomic Data

Table 3 Genes and QTLs that are close to SNPs associated with RFI and DMI

SNP (trait)	Gene	Gene ID^a	Dist gene (kb)^b	Strand	Dist QTL (Mb)^c	QTL ID^d	Full gene name (description)
rs109784719 (DMI)	STMN2	534991	27.4	+	44.1	#4365	Stathmin-like 2
rs29024524 (DMI)	CCDC171	538331	0	-	12.1	#4425	Coiled-coil domain containing 171
	PSIP1	282011	48.3	+			PC4 and SFRS1 interacting protein 1
	SNAPC3	511366	89.3	-			Small nuclear RNA activating comp 3
rs134003539 (DMI)	ZNF804B	100295505	0	+	4.5	#10584	Zinc finger protein 804B
rs41660853 (RFI)	ANXA10	505322	0	+	7.1	#4353	Annexin A10
	DDX60	787280	0	-	7.9	#5274	DEAD (Asp-Glu-Ala-Asp) box polypep 60
rs135777172 (RFI)	GPR132	539146	14.8	+	2.2	#4462	G protein-coupled receptor 132
	CDCA4	527837	40.7	-			Cell division cycle associated 4
	AHNAK2	527701	84.9	-			AHNAK nucleoprotein 2
	BRF1	618161	93.3	-			RNA polymerase III transcr init factor 90

^aIdentification of the gene according to Ensembl genes database 72.
^bDistance in kb of SNP for the gene.
^cDistance in Mb of SNP for the closer QTL described in trait associated with SNP.
^dIdentification of QTL according to the cattle QTLdb database.

ISSN: 2730-6844