Skip to main content

Advertisement

Table 2 The significant SNPs associated with residual feed intake 1 (RFI1)

From: Genome-wide association and systems genetic analyses of residual feed intake, daily feed consumption, backfat and weight gain in pigs

SNP SSC1 Position p-value MAF2 Var.Exp3 Nearest gene Gene name
MARC0013869 0 0 5.13 × 10-7 0.47 0.21   
MARC0112693 1 30734120 1.52 × 10-6 0.44 0.19 PEX7 PEX7 peroxisomal biogenesis factor 7
H3GA0001223 1 30,769,583 1.41 × 10-6 0.44 0.19 PEX7 PEX7 peroxisomal biogenesis factor 7
ASGA0082396 1 30,941,797 3.73 × 10-7 0.45 0.20 MAP3K5 mitogen-activated protein kinase kinase kinase 5
ALGA0106992 1 30,962,276 3.13 × 10-7 0.45 0.20 MAP3K5 mitogen-activated protein kinase kinase kinase 5
ASGA0094502 1 30,978,281 3.73 × 10-7 0.45 0.20 MAP3K5 mitogen-activated protein kinase kinase kinase 5
ALGA0107451 1 31,008,523 3.07 × 10-7 0.45 0.20 MAP3K5 mitogen-activated protein kinase kinase kinase 5
H3GA0001228 1 31,202,546 1.89 × 10-7 0.44 0.21 MAP3K5 mitogen-activated protein kinase kinase kinase 5
ALGA0003540 1 60,869,380 5.44 × 10-7 0.15 0.15 NT5E 5'-nucleotidase, ecto
ALGA0003690 1 64,094,344 4.04 × 10-7 0.26 0.18 GABRR2 gamma-aminobutyric acid (GABA) A receptor, rho 2
ALGA0108119 9 120,773,379 5.10 × 10-7 0.47 0.21 ENSSSCG00000022338 Uncharacterized protein
ALGA0054579 9 120,972,491 3.86 × 10-7 0.47 0.21 ENSSSCG00000022338 Uncharacterized protein
DRGA0009690 9 121,359,360 9.48 × 10-7 0.47 0.20 ENSSSCG00000022338 Uncharacterized protein
H3GA0028049 9 121,407,081 7.61 × 10-7 0.48 0.20 ENSSSCG00000022338 Uncharacterized protein
H3GA0038097 13 21,3691,291 1.29 × 10-6 0.12 0.13 DSCAM Down syndrome cell adhesion molecule
  1. 1: Pig Chromosome ; 2: Minor Allele Frequency ; 3: Additive variance explained by SNP.