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Table 3 Significant SNPs associated with residual feed intake 2 (RFI2)

From: Genome-wide association and systems genetic analyses of residual feed intake, daily feed consumption, backfat and weight gain in pigs

SNP SSC1 Position p-value MAF2 Var.exp3 Nearest gene Gene name
MARC0013869 0 0 3.15 × 10-7 0.474 0.20   
ASGA0082396 1 30,941,797 5.64 × 10-7 0.448 0.19 MAP3K5 Mitogen-activated protein kinase kinase kinase 5
ALGA0106992 1 30,962,276 4.68 × 10-7 0.448 0.19 MAP3K5 Mitogen-activated protein kinase kinase kinase 5
ASGA0094502 1 30,978,281 5.09 × 10-7 0.449 0.19 MAP3K5 Mitogen-activated protein kinase kinase kinase 5
ALGA0107451 1 31,008,523 4.54 × 10-7 0.450 0.19 MAP3K5 Mitogen-activated protein kinase kinase kinase 5
H3GA0001228 1 31,202,546 3.67 × 10-7 0.443 0.20 MAP3K5 Mitogen-activated protein kinase kinase kinase 5
ALGA0108119 9 120,773,379 3.64 × 10-7 0.473 0.20 ENSSSCG00000022338 Uncharacterized protein
ALGA0054579 9 120,972,491 2.49 × 10-7 0.473 0.20 ENSSSCG00000022338 Uncharacterized protein
DRGA0009690 9 121,359,360 6.02 × 10-7 0.475 0.20 ENSSSCG00000022338 Uncharacterized protein
H3GA0028049 9 121,407,081 5.02 × 10-7 0.475 0.20 ENSSSCG00000022338 Uncharacterized protein
ASGA0089950 13 210,531,047 2.87 × 10-7 0.113 0.13 HLSC Holocarboxylase synthetase
ASGA0097399 13 210,534,054 3.07 × 10-7 0.114 0.13 HLSC Holocarboxylase synthetase
  1. 1: Pig Chromosome ; 2: Minor Allele Frequency ; 3: Additive variance explained by SNP.