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Table 4 Location of AFLP sequences, list of primers and restriction enzymes for genotyping of SNP markers

From: Population structure of four Thai indigenous chicken breeds

Markers Chromosome Forward primer Reverse primer Annealing Tem. (°C) Enzyme
AFLP01 2 5'-tgtatttccaacctactctac-3' 5'-gctgtacgtaaggctgcag-3' 58 TaqI
AFLP02 3 5'-gcacctggaagaatagatag-3' 5'-gtctttcctggtattcttatg-3' 56 EcoRI
AFLP03 4 5'-caggaacagcatagaattaaag-3' 5'-caccagtgaccaaggcaag-3' 58 TaqI
AFLP04 15 5'-agctgctctcttcagtcag-3' 5'-agatttcaaagtgtcatgtgc-3' 58 TaqI
AFLP05 4 5'-tgcaatgcttatctacctgg-3' 5'-cgtctatctggaaattgctg-3' 58 TaqI
AFLP06 11 5'-gagaacctgctggtggtg-3' 5'-tccatgtggcggacgatg-3' 60 Hsp92II
AFLP07 4 5'-gtttcagcaaggcagagttc-3' 5'-gaccaaacaacgtcacgttc-3' 58 TaqI
AFLP08 6 5'-tttgtttcagcaaggcagag-3' 5'-gaccaaacaacgtcacgttc-3' 58 TaqI
AFLP09 1 5'-aaccatgcagccagagaatg-3' 5'-gcagccattcatacatggtc-3' 58 EcoRI
AFLP10 14 5'-gctctgatcaaagacattcc-3' 5'-gatcatcttcggctacagag-3' 58 AluI
AFLP11 11 5'-gtgcagctggggttggg-3' 5'-ggaaccggtgcttgcattg-3' 58 BsuRI
AFLP12 1 5'-tgaccatgctttctccatag-3' 5'-tttggaaatcaattttcagctc-3' 58 TaqI
AFLP13 1 5'-gcagctgcgtataaacacag-3' 5'-caggactgcagggataaatg-3' 58 TaqI
AFLP14 10 5'-gcttcagcaggcagatttc-3' 5'-ctttacgtggcccaccttc-3' 58 BsuRI
AFLP15 2 5'-aaactcttttcccttggctg-3' 5'-gtgcaagacggactgtattg-3' 58 EcoRI
AFLP16 8 5'-actcgcaggagaacttcttag-3' 5'-gcagtcctgtgacttatttg-3' 58 EcoRI
AFLP17 1 5'-gaaatcgttgccaaaagttgc-3' 5'-gttcacgcagctcggatg-3' 58 MspI
AFLP18 7 5'-ggtttgatttctgggatctc-3' 5'-gccttaggtaacattccttc-3' 58 EcoRI
AFLP19 2 5'-cctcctactgattctgtaatg-3' 5'-ttttctgctcatctgtactgg-3' 56 Hin6I
AFLP20 4 5'-aggatcacaaataaccaacga-3' 5'-gactacagtgagaagctctg-3' 60 MboI
AFLP21 10 5'-gtctgcacacctggtgtc-3' 5'-caggttcacacggagatc-3' 58 MspI
AFLP22 1 5'-ggaggttcgtgagaagctg-3' 5'-tgtacaacagcagcaagcaaa-3' 60 Hsp92II
AFLP23 8 5'-ctttctccttctccccaagt-3' 5'-cttggatagggtctgcaga-3' 58 TaqI
AFLP24 1 5'-gcagtgcacctggattttag-3' 5'-attatcccttccctcagctg-3' 60 TaqI
AFLP25 17 5'-ctgctagcaggtaatgagat-3' 5'-tggcagaaagattccgtcaa-3' 55 TaqI
AFLP26 2 5'-tctctgctagtgtgtgtgga-3' 5'-caccaggactgaagaacaga-3' 60 EcoRI
AFLP27 3 5'-ctgagaatagccaggacaca-3' 5'-gtgttgggaatttaggaaac-3' 58 TaqI
AFLP28 11 5'-gtgagggcaaccagagcca-3' 5'-tgaagattcctgttcttgag-3' 58 Hsp92II
AFLP29 9 5'-ctgctgcggaccgaaatatc-3' 5'-gatagttccgaacagtttgc-3' 58 BsuRI
AFLP30 13 5'-cagatgatcacagtaacctg-3' 5'-gtggaacttgtaagtacgc-3' 58 TaqI