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Table 5 Annotations of hypermethylated genes

From: Analysis of the leaf methylomes of parents and their hybrids provides new insight into hybrid vigor in Populus deltoides

Gene ID Located scaffold Start position of the gene in the scaffold End position of the gene in the scaffold Length /bp Annotation
POPTR_0010s02290 scaffold_10 2630875 2632874 2000 Predicted GTP-binding protein (ODN superfamily)
POPTR_0010s19920 scaffold_10 17678728 17680727 2000 Predicted 3-ketosphinganine reductase
POPTR_0007s08200 scaffold_7 6768492 6770491 2000 Ubiquitin-like protein
POPTR_0019s08620 scaffold_19 10148682 10150681 2000 Cytochrome P450 CYP4/CYP19/CYP26 subfamilies
POPTR_0009s10580 scaffold_9 9068290 9070289 2000 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases
POPTR_0012s07360 scaffold_12 8260585 8262584 2000 Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily
POPTR_0015s09720 scaffold_15 10859015 10861014 2000 Cytochrome P450 CYP2 subfamily
POPTR_0019s02490 scaffold_19 2267881 2269880 2000 Serine/threonine protein kinase
POPTR_0019s09910 scaffold_19 11534694 11536693 2000 Molybdopterin converting factor, small subunit
POPTR_0008s18420 scaffold_8 12397080 12398840 1761 Leucine-rich repeat protein
POPTR_0017s04200 scaffold_17 3227408 3228528 535 Serine/threonine protein kinase
POPTR_0019s09760 scaffold_19 11360305 11360904 600 Apoptotic ATPase
  1. The annotation of the hypermethylated genes in better-parent hybrids compared to the parents and lower-parent hybrids. These annotations were obtained according to orthologous genes in P. trichocarpa. Additional files