From: Comprehensive transcriptome analysis of early male and female Bactrocera jarvisi embryos
 | Comparison | Samples¹ | No. of differentially expressed contigs (FDR p < 0.001) | No. up-regulated in males and/or older embryos | Additional filters | No. of transcripts of interest |
---|---|---|---|---|---|---|
 | Male/Female comparisons |  |  |  |  |  |
A | Late only (3-5h) | 1,2 vs 3,4 | 2 | 0 | Â | 0 |
B | Late only (3-5h), excl. BJ1 | 2 vs 3,4 | 21 | 9 | †mean normalised RPKM of female samples <5 | 5 |
C | Early only (2-3h) | 5,6 vs 7,8 | 73 | 4 | †mean normalised RPKM of female samples <5 | 0 |
D | Early only (2-3h), excl. BJ5 | 6 vs 7,8 | 142 | 46 | †mean normalised RPKM of female samples <5 | 4 |
E | Both (3-5h and 2-3h) | 1,2,5,6 vs 3,4,7,8 | 0 | 0 | Â | Â |
F | Both (3-5h and 2-3h) excl. BJ1 and BJ5 | 2,6 vs 3,4,7,8 | 0 | 0 | Â | Â |
G | Both (3-5h and 2-3h) excl. BJ1 | 2,5,6 vs 3,4,7,8 | 0 | 0 | Â | Â |
 | Time comparisons |  |  |  |  |  |
H | Both (Male and female) | 1,2,3,4 vs 5,6,7,8 | 283 | 86 | Â | Â |
I | Both (Male and female) excl. BJ1 and BJ5 | 2,3,4 vs 6,7,8 | 2313 | 1213 | #mean normalised RPKM of 2-3h samples <50 | 1051* |
J | Both (Male and female) excl. BJ1 | 2,3,4 vs 5,6,7,8 | 1846 | 1128 | #mean normalised RPKM of 2-3h samples <50 | 1019 |
K | Male only | 1,2 vs 5,6 | 14 | 2 | Â | Â |
L | Male only excl. BJ1 and BJ5 | 2 vs 6 | 1321 | 827 | #mean normalised RPKM of 2-3h samples <50 | 673* |
M | Male only excl. BJ2 and BJ6 | 1 vs 5 | 183 | 66 | Â | Â |
N | Female only | 3,4 vs 7,8 | 1980 | 862* | Â | Â |
 | Intersections |  |  |  |  |  |
 | I ∩ L |  |  |  |  | 341 |
 | (I ∩ L) - (I ∩ L ∩ N) |  |  |  |  | 105 |